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# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI="3"
inherit eutils multilib toolchain-funcs
DESCRIPTION="tRNA detection in large-scale genome sequences"
HOMEPAGE="http://lowelab.ucsc.edu/tRNAscan-SE/"
SRC_URI="mirror://gentoo/${P}.tar.bz2"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="amd64 x86"
IUSE=""
RDEPEND="dev-lang/perl"
DEPEND="${RDEPEND}"
src_prepare() {
epatch "${FILESDIR}"/${P}-glibc-2.10.patch
epatch "${FILESDIR}"/${P}-ldflags.patch
sed -e "s%BINDIR = \$(HOME)/bin%BINDIR = ${EPREFIX}/usr/bin%" \
-e "s%LIBDIR = \$(HOME)/lib/tRNAscan-SE%LIBDIR = ${EPRFIX}/usr/$(get_libdir)/${PN}%" \
-e "s%MANDIR = \$(HOME)/man%MANDIR = ${EPREFIX}/usr/share/man%" \
-e "s%CC = gcc%CC = $(tc-getCC)%" \
-e "s%CFLAGS = -O%CFLAGS = ${CFLAGS}%" \
-i Makefile || die
}
src_install() {
mv tRNAscan-SE.man tRNAscan-SE.man.1 || die
dobin covels-SE coves-SE eufindtRNA tRNAscan-SE trnascan-1.4 || die
doman tRNAscan-SE.man.1 || die
dodoc MANUAL README Release.history || die
insinto /usr/$(get_libdir)/${PN}/
doins *.cm gcode.* Dsignal TPCsignal || die
insinto /usr/share/doc/${PF}
doins Manual.ps || die
}
src_test() {
make PATH="${S}:${PATH}" testrun || die
}
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