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# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
inherit toolchain-funcs
MY_P="${PN}_v${PV/./_}"
DESCRIPTION="Probabilistic Consistency-based Multiple Alignment of Amino Acid Sequences"
HOMEPAGE="http://probcons.stanford.edu/"
SRC_URI="http://probcons.stanford.edu/${MY_P}.tar.gz"
S="${WORKDIR}/${PN}"
LICENSE="public-domain"
SLOT="0"
KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
# Gnuplot is explicitly runtime-only, it's run using system()
RDEPEND="
!sci-geosciences/gmt
sci-visualization/gnuplot"
PATCHES=(
"${FILESDIR}"/${P}-cxxflags.patch
"${FILESDIR}"/gcc-4.3.patch
"${FILESDIR}"/${P}-gcc-4.6.patch
)
src_compile() {
emake \
CXX="$(tc-getCXX)" \
OPT_CXXFLAGS="${CXXFLAGS}"
}
src_install() {
dobin probcons project makegnuplot
# Overlap with imagemagick
newbin compare compare-probcons
dodoc README
}
pkg_postinst() {
ewarn "The 'compare' binary is installed as 'compare-probcons'"
ewarn "to avoid overlap with other packages."
einfo "You may also want to download the user manual"
einfo "from http://probcons.stanford.edu/manual.pdf"
}
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