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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
inherit cmake-utils
DESCRIPTION="Fast inference of approximately-maximum-likelihood phylogenetic trees"
HOMEPAGE="http://www.microbesonline.org/fasttree/"
SRC_URI="
http://www.microbesonline.org/fasttree/FastTree-${PV}.c
http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-${PV}.c
http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-${PV}.tar.gz
"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="amd64 x86"
IUSE="double-precision openmp cpu_flags_x86_sse3"
REQUIRED_USE="?? ( double-precision cpu_flags_x86_sse3 )"
DOCS=( README )
PATCHES=( "${FILESDIR}"/${P}-format-security.patch )
src_unpack() {
mkdir "${S}" || die
cd "${S}" || die
unpack ${A}
cp "${DISTDIR}"/{FastTreeUPGMA-${PV}.c,FastTree-${PV}.c} . || die
}
src_prepare() {
cp "${FILESDIR}"/CMakeLists.txt . || die
cmake-utils_src_prepare
}
src_configure() {
local mycmakeargs=(
-DVERSION="${PV}"
$(cmake-utils_use_has cpu_flags_x86_sse3 sse3)
$(cmake-utils_use_use openmp)
$(cmake-utils_use_use double-precision double)
)
cmake-utils_src_configure
}
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