blob: c3eaf79cc8f2b99f58ecbff243e9aa797c1fb330 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
|
diff --git a/Makefile b/Makefile
index f1eaa26..92d3130 100644
--- a/Makefile
+++ b/Makefile
@@ -10,7 +10,7 @@ CCFLAGS = -O2 -DNO_OPENMP
# in command line:
# make openmp=yes
ifeq ($(openmp),yes)
-CCFLAGS = -O2 -fopenmp
+CXXFLAGS += -fopenmp
endif
# support debugging
@@ -18,16 +18,16 @@ endif
# make debug=yes
# make openmp=yes debug=yes
ifeq ($(debug),yes)
-CCFLAGS += -ggdb
+CXXFLAGS += -ggdb
endif
#LDFLAGS = -static -o
-LDFLAGS = -o
+LDFLAGS += -o
PROGS = cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div
.c++.o:
- $(CC) $(CCFLAGS) -c $<
+ $(CXX) $(CXXFLAGS) -c $<
all: $(PROGS)
@@ -37,39 +37,39 @@ clean:
# programs
cd-hit: cdhit-common.o cdhit-utility.o cdhit.o
- $(CC) $(CCFLAGS) cdhit.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit
+ $(CXX) $(CXXFLAGS) cdhit.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit
cd-hit-2d: cdhit-common.o cdhit-utility.o cdhit-2d.o
- $(CC) $(CCFLAGS) cdhit-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-2d
+ $(CXX) $(CXXFLAGS) cdhit-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-2d
cd-hit-est: cdhit-common.o cdhit-utility.o cdhit-est.o
- $(CC) $(CCFLAGS) cdhit-est.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est
+ $(CXX) $(CXXFLAGS) cdhit-est.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est
cd-hit-est-2d: cdhit-common.o cdhit-utility.o cdhit-est-2d.o
- $(CC) $(CCFLAGS) cdhit-est-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est-2d
+ $(CXX) $(CXXFLAGS) cdhit-est-2d.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-est-2d
cd-hit-div: cdhit-common.o cdhit-utility.o cdhit-div.o
- $(CC) $(CCFLAGS) cdhit-div.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-div
+ $(CXX) $(CXXFLAGS) cdhit-div.o cdhit-common.o cdhit-utility.o $(LDFLAGS) cd-hit-div
# objects
cdhit-common.o: cdhit-common.c++ cdhit-common.h
- $(CC) $(CCFLAGS) cdhit-common.c++ -c
+ $(CXX) $(CXXFLAGS) cdhit-common.c++ -c
cdhit-utility.o: cdhit-utility.c++ cdhit-utility.h
- $(CC) $(CCFLAGS) cdhit-utility.c++ -c
+ $(CXX) $(CXXFLAGS) cdhit-utility.c++ -c
cdhit.o: cdhit.c++ cdhit-utility.h
- $(CC) $(CCFLAGS) cdhit.c++ -c
+ $(CXX) $(CXXFLAGS) cdhit.c++ -c
cdhit-2d.o: cdhit-2d.c++ cdhit-utility.h
- $(CC) $(CCFLAGS) cdhit-2d.c++ -c
+ $(CXX) $(CXXFLAGS) cdhit-2d.c++ -c
cdhit-est.o: cdhit-est.c++ cdhit-utility.h
- $(CC) $(CCFLAGS) cdhit-est.c++ -c
+ $(CXX) $(CXXFLAGS) cdhit-est.c++ -c
cdhit-est-2d.o: cdhit-est-2d.c++ cdhit-utility.h
- $(CC) $(CCFLAGS) cdhit-est-2d.c++ -c
+ $(CXX) $(CXXFLAGS) cdhit-est-2d.c++ -c
cdhit-div.o: cdhit-div.c++ cdhit-common.h
- $(CC) $(CCFLAGS) cdhit-div.c++ -c
+ $(CXX) $(CXXFLAGS) cdhit-div.c++ -c
|
GitWeb