DEFINED_PHASES=configure install postinst prepare setup DEPEND=dev-libs/boost sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 sci-biology/seqan:1.4 !=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Python-based splice junction mapper for RNA-Seq reads using bowtie2 EAPI=6 HOMEPAGE=https://ccb.jhu.edu/software/tophat/ IUSE=debug python_targets_python2_7 KEYWORDS=~amd64 ~x86 LICENSE=Artistic RDEPEND=dev-libs/boost sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 SLOT=0 SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz _eclass_exported_funcs=pkg_postinst:- pkg_setup:python-single-r1 src_prepare:- src_configure:- src_install:- _eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c eutils 792f83d5ec9536cb5ccef375469d8bde flag-o-matic 8632fcd33a047954f007dee9a137bdcc libtool 4890219c51da247200223277f993e054 multilib d062ae4ba2fc40a19c11de2ad89b6616 python-single-r1 2ebea8fbab356d63110245129a67a6dd python-utils-r1 c0ed2a2f233d3af6dd556048695dc5cb toolchain-funcs 82165206dedb2075f9a0fb8f9b1f9441 _md5_=99a8a65bd99f7819e12ab99f02b47509