From 6d783d67aebc66e58f0e0966677d614bbe385186 Mon Sep 17 00:00:00 2001 From: Repository mirror & CI Date: Mon, 12 Apr 2021 10:36:52 +0000 Subject: 2021-04-12 10:36:47 UTC --- metadata/md5-cache/sci-biology/abyss-2.0.3-r2 | 4 ++-- metadata/md5-cache/sci-biology/bfast-0.7.0a | 4 ++-- metadata/md5-cache/sci-biology/biogrep-1.0-r2 | 4 ++-- metadata/md5-cache/sci-biology/clustal-omega-1.2.4 | 4 ++-- metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 | 4 ++-- metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 | 4 ++-- metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 | 4 ++-- metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 | 4 ++-- metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 | 4 ++-- metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 | 4 ++-- metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 | 4 ++-- metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 | 4 ++-- metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 | 4 ++-- metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 | 4 ++-- metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 | 4 ++-- metadata/md5-cache/sci-biology/embassy-signature-0.1.660 | 4 ++-- metadata/md5-cache/sci-biology/embassy-structure-0.1.660 | 4 ++-- metadata/md5-cache/sci-biology/embassy-topo-2.0.660 | 4 ++-- metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 | 4 ++-- metadata/md5-cache/sci-biology/emboss-6.6.0-r1 | 4 ++-- metadata/md5-cache/sci-biology/eugene-4.1d | 4 ++-- metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 | 4 ++-- metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 | 4 ++-- metadata/md5-cache/sci-biology/gibbs-3.1 | 4 ++-- metadata/md5-cache/sci-biology/iedera-1.05-r1 | 4 ++-- metadata/md5-cache/sci-biology/libgtextutils-0.6.1 | 4 ++-- metadata/md5-cache/sci-biology/maq-0.7.1-r2 | 4 ++-- metadata/md5-cache/sci-biology/maqview-0.2.5-r3 | 4 ++-- metadata/md5-cache/sci-biology/mcl-14.137 | 4 ++-- metadata/md5-cache/sci-biology/mira-4.0.2 | 4 ++-- metadata/md5-cache/sci-biology/newick-utils-1.6-r1 | 4 ++-- metadata/md5-cache/sci-biology/samtools-1.10 | 4 ++-- metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 | 4 ++-- metadata/md5-cache/sci-biology/vcftools-0.1.14 | 4 ++-- metadata/md5-cache/sci-biology/yass-1.14-r2 | 4 ++-- 35 files changed, 70 insertions(+), 70 deletions(-) (limited to 'metadata/md5-cache/sci-biology') diff --git a/metadata/md5-cache/sci-biology/abyss-2.0.3-r2 b/metadata/md5-cache/sci-biology/abyss-2.0.3-r2 index 8a9000f072b4..dd6abcc3a13c 100644 --- a/metadata/md5-cache/sci-biology/abyss-2.0.3-r2 +++ b/metadata/md5-cache/sci-biology/abyss-2.0.3-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare pretend setup -DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc ) sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc ) sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler EAPI=6 HOMEPAGE=http://www.bcgsc.ca/platform/bioinfo/software/abyss/ @@ -10,5 +10,5 @@ LICENSE=abyss RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) mpi? ( sys-cluster/openmpi ) SLOT=0 SRC_URI=https://github.com/bcgsc/abyss/archive/2.0.3.tar.gz -> abyss-2.0.3.tar.gz -_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=14d874a3152b5d75a6be53f68e24fd47 diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a index c70a7618a1a0..aa22f610b887 100644 --- a/metadata/md5-cache/sci-biology/bfast-0.7.0a +++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=prepare DESCRIPTION=Blat-like Fast Accurate Search Tool EAPI=7 @@ -11,5 +11,5 @@ RDEPEND=dev-perl/XML-Simple RESTRICT=test SLOT=0 SRC_URI=mirror://sourceforge/bfast/bfast-0.7.0a.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=e64abecddb86e9860edc80410f299d83 diff --git a/metadata/md5-cache/sci-biology/biogrep-1.0-r2 b/metadata/md5-cache/sci-biology/biogrep-1.0-r2 index e9f82c7ee570..9ad9005678ee 100644 --- a/metadata/md5-cache/sci-biology/biogrep-1.0-r2 +++ b/metadata/md5-cache/sci-biology/biogrep-1.0-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=install prepare -DEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +DEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Multithreaded tool for matching large sets of patterns against biosequence DBs EAPI=6 HOMEPAGE=http://stephanopoulos.openwetware.org/BIOGREP.html @@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://www.openwetware.org/images/3/3d/Biogrep-1.0.tar.gz -> biogrep-1.0.tar.gz doc? ( http://www.openwetware.org/images/4/49/Biogrep.pdf -> biogrep-1.0.pdf ) -_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=9731727dae2a2514bcaa486b0059272e diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 index 8f95537a52a7..13fc6a8133c1 100644 --- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 +++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=dev-libs/argtable sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +DEPEND=dev-libs/argtable sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Scalable multiple alignment of protein sequences EAPI=6 HOMEPAGE=http://www.clustal.org/omega/ @@ -10,5 +10,5 @@ LICENSE=GPL-2 RDEPEND=dev-libs/argtable SLOT=0 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz -_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=9ade45d2e283bc5fcc7eef16725e18ae diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 index 98511e79cff0..62adfe5e862e 100644 --- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Applications from the CBS group @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 _md5_=77305643fe2a87a5fac7d915688baa6a diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 index 7d81743a5a07..ea7f14071043 100644 --- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Clustal Omega - Multiple Sequence Alignment @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 _md5_=58b5684a48770c482660c463cca0df76 diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 index e99d55952ea4..1b2284acad94 100644 --- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Protein domain analysis add-on package @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 _md5_=20f6c7abf908473570516ff49847a320 diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 index 7a82eb0cb720..e21a9a54a572 100644 --- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Protein domain alignment add-on package @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.660.tar.gz -> embassy-domalign-0.1.660.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 _md5_=fc6983ff5591fa7825d4cd99d376c861 diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 index 89086f4629ef..661596996adf 100644 --- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Protein domain search add-on package @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.660.tar.gz -> embassy-domsearch-0.1.660.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 _md5_=00bdcd88d6e9743af4531e223888195b diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 index d53f3d90f193..a93d5caf4071 100644 --- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 +++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=sys-libs/ncurses:0= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Simple menu of EMBOSS applications @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sys-libs/ncurses:0= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.660.tar.gz -> embassy-emnu-1.05.660.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 _md5_=54738204e5b5aeb9aa0216f7c53c77df diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 index 5ed6a5376516..6bfb6fdb1fb2 100644 --- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.660.tar.gz -> embassy-esim4-1.0.0.660.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 _md5_=63d13362b3c8b045b78ed452697b59f3 diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 index d108ab5695a7..4252bf2d71ba 100644 --- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 +++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of HMMER wrapper - sequence analysis with profile HMMs @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/hmmer:2 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.660.tar.gz -> embassy-hmmer-2.3.2.660.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 _md5_=c5399e3d4e7e59aaa70e6477a41a7345 diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 index b24afe31220a..65305d01cc61 100644 --- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of InterProScan motif detection add-on package @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 _md5_=88c3ac6be6849f4230f25bf463931561 diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 index 587f49ea4436..e42e5bc8a906 100644 --- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of MSE - Multiple Sequence Screen Editor @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 _md5_=d12c79c0d0054aecac7a987e9b5f5655 diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 index 5afcb825a55c..b09553420fdf 100644 --- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 +++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of The Phylogeny Inference Package @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 free-noncomm RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 _md5_=9ecb2590e9a1ae2353dafa387e89d48c diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 index 5c5179faa491..7275ac6997d2 100644 --- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Protein signature add-on package @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.660.tar.gz -> embassy-signature-0.1.660.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 _md5_=0be4d65f424916bbe6d7f507fed3014f diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 index 6d600ba53875..4a60fcc4a91d 100644 --- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Protein structure add-on package @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 _md5_=a0f67c8d9181b193f43eb5e99fdbe92f diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 index 39f958ca5846..8b5d31798ccc 100644 --- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Transmembrane protein display @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 _md5_=9ecbee609930ce8d1c14b72746c0ff64 diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 index 43238ed091bb..a9f2c113685b 100644 --- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 +++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] DESCRIPTION=EMBOSS integrated version of Vienna RNA package - RNA folding @@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 _md5_=bbce91d6a8900865a446cb3dea302ccf diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 index b892f738a744..9cb271704592 100644 --- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 +++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install postinst prepare DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) DESCRIPTION=The European Molecular Biology Open Software Suite - A sequence analysis package @@ -12,5 +12,5 @@ PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 readme.gentoo-r1 22ae82e140bdd95d17a34fd5fd733190 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 emboss-r2 93f4f6ac626ed63f042344dd76574b41 readme.gentoo-r1 22ae82e140bdd95d17a34fd5fd733190 _md5_=72c86b427ea83b8feb792884f23feaf3 diff --git a/metadata/md5-cache/sci-biology/eugene-4.1d b/metadata/md5-cache/sci-biology/eugene-4.1d index 5ff8616d9934..43c8ec64f7bf 100644 --- a/metadata/md5-cache/sci-biology/eugene-4.1d +++ b/metadata/md5-cache/sci-biology/eugene-4.1d @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=media-libs/gd[png] media-libs/libpng:0= sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +DEPEND=media-libs/gd[png] media-libs/libpng:0= sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Prokaryotic and Eukaryotic gene predictor EAPI=6 HOMEPAGE=http://eugene.toulouse.inra.fr/ @@ -10,5 +10,5 @@ RDEPEND=media-libs/gd[png] media-libs/libpng:0= RESTRICT=test SLOT=0 SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz -_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=683d1e7f9daeda6cd20b92117330ea81 diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 index bbb17990bb9c..38bb11b68b3c 100644 --- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 +++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=dev-libs/glib:2 sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +DEPEND=dev-libs/glib:2 sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Generic tool for pairwise sequence comparison EAPI=6 HOMEPAGE=https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate @@ -12,5 +12,5 @@ REQUIRED_USE=test? ( utils ) RESTRICT=!test? ( test ) SLOT=0 SRC_URI=http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz -_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=05c99b447503c7a3fae4594cd126939a diff --git a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 index d742e9780484..a629933abaf1 100644 --- a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 +++ b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=sci-biology/libgtextutils virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +DEPEND=sci-biology/libgtextutils virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Tools for Short Read FASTA/FASTQ file processing EAPI=6 HOMEPAGE=http://hannonlab.cshl.edu/fastx_toolkit @@ -9,5 +9,5 @@ LICENSE=AGPL-3 RDEPEND=dev-perl/PerlIO-gzip dev-perl/GDGraph sci-biology/libgtextutils:= sci-visualization/gnuplot SLOT=0 SRC_URI=https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2 -_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=c3bb0edd6b01a31019cf5fd59e22122a diff --git a/metadata/md5-cache/sci-biology/gibbs-3.1 b/metadata/md5-cache/sci-biology/gibbs-3.1 index cb41f4642c63..f604e8d1e347 100644 --- a/metadata/md5-cache/sci-biology/gibbs-3.1 +++ b/metadata/md5-cache/sci-biology/gibbs-3.1 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install postinst prepare DEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 ) DESCRIPTION=Identify motifs, conserved regions, in DNA or protein sequences @@ -11,5 +11,5 @@ LICENSE=GPL-2 RDEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 ) SLOT=0 SRC_URI=mirror://gentoo/gibbs-3.1.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=8d48efee68d1063803fccbc4c73a0f5d diff --git a/metadata/md5-cache/sci-biology/iedera-1.05-r1 b/metadata/md5-cache/sci-biology/iedera-1.05-r1 index dbb200c64235..b44ec01a5814 100644 --- a/metadata/md5-cache/sci-biology/iedera-1.05-r1 +++ b/metadata/md5-cache/sci-biology/iedera-1.05-r1 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +DEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=A subset seed design tool for DNA sequence alignment EAPI=6 HOMEPAGE=http://bioinfo.lifl.fr/yass/iedera.php @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://bioinfo.lifl.fr/yass/files/iedera-1.05.tar.gz -_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=ce77e1e27bd52fed2fd2af52744d6288 diff --git a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 index 4c6de0ecb6b9..a6bed5b51a24 100644 --- a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 +++ b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install prepare -DEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +DEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Gordon Text utils Library EAPI=6 HOMEPAGE=http://hannonlab.cshl.edu/fastx_toolkit/ @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=AGPL-3 SLOT=0/0 SRC_URI=http://hannonlab.cshl.edu/fastx_toolkit/libgtextutils-0.6.1.tar.bz2 -_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=867c9b9e4eee26ad2a76ff6ff0594f52 diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 b/metadata/md5-cache/sci-biology/maq-0.7.1-r2 index 4615e45519a6..1af088318fd8 100644 --- a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 +++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=install prepare -DEPEND=sys-libs/zlib sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +DEPEND=sys-libs/zlib sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Mapping and Assembly with Qualities, mapping NGS reads to reference genomes EAPI=6 HOMEPAGE=http://maq.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=GPL-3 RDEPEND=sys-libs/zlib SLOT=0 SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz -_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=39ffb0025210075a8d7d7f6f81f8da56 diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 index 2abb67822e9e..48f10e6cd934 100644 --- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 +++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 @@ -1,5 +1,5 @@ DEFINED_PHASES=prepare -DEPEND=media-libs/freeglut sys-libs/zlib sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +DEPEND=media-libs/freeglut sys-libs/zlib sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=GUI for sci-biology/maq, a short read mapping assembler EAPI=6 HOMEPAGE=http://maq.sourceforge.net/ @@ -9,5 +9,5 @@ LICENSE=GPL-3 RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq SLOT=0 SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz -_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=dee50558d10e75ff9e96f4c3f177c55f diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137 index 2e016cd2b165..df0fa1895367 100644 --- a/metadata/md5-cache/sci-biology/mcl-14.137 +++ b/metadata/md5-cache/sci-biology/mcl-14.137 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure prepare DESCRIPTION=A Markov Cluster Algorithm implementation EAPI=7 @@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=9779366f51f2fea08274072a9a019159 diff --git a/metadata/md5-cache/sci-biology/mira-4.0.2 b/metadata/md5-cache/sci-biology/mira-4.0.2 index 136940654aaf..c6feefe4d23b 100644 --- a/metadata/md5-cache/sci-biology/mira-4.0.2 +++ b/metadata/md5-cache/sci-biology/mira-4.0.2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install postinst prepare -DEPEND=dev-libs/boost[threads] dev-util/google-perftools sys-devel/flex app-editors/vim-core dev-libs/expat sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +DEPEND=dev-libs/boost[threads] dev-util/google-perftools sys-devel/flex app-editors/vim-core dev-libs/expat sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Illumina EAPI=6 HOMEPAGE=http://www.chevreux.org/projects_mira.html @@ -10,5 +10,5 @@ LICENSE=GPL-2 RDEPEND=dev-libs/boost[threads] dev-util/google-perftools SLOT=0 SRC_URI=https://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira-4.0.2.tar.bz2 mirror://sourceforge/mira-assembler/mira_3rdparty_06-07-2012.tar.bz2 -_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=fda11f1c5cd244c9f03806334b1eda1c diff --git a/metadata/md5-cache/sci-biology/newick-utils-1.6-r1 b/metadata/md5-cache/sci-biology/newick-utils-1.6-r1 index d0d884c048d3..33e16a9e5c50 100644 --- a/metadata/md5-cache/sci-biology/newick-utils-1.6-r1 +++ b/metadata/md5-cache/sci-biology/newick-utils-1.6-r1 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure install prepare DEPEND=xml? ( dev-libs/libxml2 ) DESCRIPTION=Tools for processing phylogenetic trees @@ -11,5 +11,5 @@ LICENSE=BSD RDEPEND=xml? ( dev-libs/libxml2 ) !dev-games/libnw SLOT=0 SRC_URI=http://cegg.unige.ch/pub/newick-utils-1.6.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=fac40fe86b457a75883a5eb465ce18d8 diff --git a/metadata/md5-cache/sci-biology/samtools-1.10 b/metadata/md5-cache/sci-biology/samtools-1.10 index 7645c2237c2a..ae4ac66b1ac8 100644 --- a/metadata/md5-cache/sci-biology/samtools-1.10 +++ b/metadata/md5-cache/sci-biology/samtools-1.10 @@ -1,4 +1,4 @@ -BDEPEND=virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=compile configure install prepare test DEPEND=dev-lang/perl =sci-libs/htslib-1.10* sys-libs/ncurses:0=[unicode] sys-libs/zlib:= DESCRIPTION=Utilities for analysing and manipulating the SAM/BAM alignment formats @@ -10,5 +10,5 @@ LICENSE=MIT RDEPEND=dev-lang/perl =sci-libs/htslib-1.10* sys-libs/ncurses:0=[unicode] sys-libs/zlib:= SLOT=0 SRC_URI=mirror://sourceforge/samtools/samtools-1.10.tar.bz2 -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=67d56fa48d3a475403ad1a726690e370 diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 index e594ed09c0c4..d90737c80e5d 100644 --- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 +++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 @@ -1,4 +1,4 @@ -BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=configure prepare DEPEND=x11-libs/wxGTK:3.0[X] DESCRIPTION=A phylogenetic tree viewer @@ -10,5 +10,5 @@ LICENSE=GPL-2 RDEPEND=x11-libs/wxGTK:3.0[X] SLOT=0 SRC_URI=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz -_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 wxwidgets 407be90c398e52298054aff2093912a3 +_eclasses_=gnuconfig 9f91b4b0c84e734a87492d4293f03de5 toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 edos2unix 33e347e171066657f91f8b0c72ec8773 l10n 8cdd85e169b835d518bc2fd59f780d8e wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e flag-o-matic c0964e43ba712cb933da5f65b958fa88 wxwidgets 407be90c398e52298054aff2093912a3 _md5_=a65777d44ca1562d5714ec2fa4c04a02 diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.14 b/metadata/md5-cache/sci-biology/vcftools-0.1.14 index 5815e2e865af..2e23e2c6582c 100644 --- a/metadata/md5-cache/sci-biology/vcftools-0.1.14 +++ b/metadata/md5-cache/sci-biology/vcftools-0.1.14 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare -DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Tools for working with VCF (Variant Call Format) files EAPI=6 HOMEPAGE=http://vcftools.sourceforge.net/ @@ -10,5 +10,5 @@ LICENSE=LGPL-3 RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) SLOT=0 SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.14/vcftools-0.1.14.tar.gz -_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da flag-o-matic c0964e43ba712cb933da5f65b958fa88 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b +_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 flag-o-matic c0964e43ba712cb933da5f65b958fa88 perl-functions 6ec4c4d8fc8324200f1c14e8d158c59b _md5_=82adffd84f2a93745e683b498b79fbe8 diff --git a/metadata/md5-cache/sci-biology/yass-1.14-r2 b/metadata/md5-cache/sci-biology/yass-1.14-r2 index c7a08eca1bd0..020d1f111334 100644 --- a/metadata/md5-cache/sci-biology/yass-1.14-r2 +++ b/metadata/md5-cache/sci-biology/yass-1.14-r2 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure prepare -DEPEND=dmalloc? ( dev-libs/dmalloc ) sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 sys-apps/gawk +DEPEND=dmalloc? ( dev-libs/dmalloc ) sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Genomic similarity search with multiple transition constrained spaced seeds EAPI=6 HOMEPAGE=http://bioinfo.lifl.fr/yass/ @@ -10,5 +10,5 @@ LICENSE=GPL-2 RDEPEND=dmalloc? ( dev-libs/dmalloc ) SLOT=0 SRC_URI=http://bioinfo.lifl.fr/yass/files/yass-1.14.tar.gz -_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 79023c161e8f625b0f1823715941c2da +_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 estack 055c42df72f76a4f45ec92b35e83cd56 epatch 9f813bb3c47cf2e60619a663b87c5f4e l10n 8cdd85e169b835d518bc2fd59f780d8e toolchain-funcs 24921b57d6561d87cbef4916a296ada4 multilib d410501a125f99ffb560b0c523cd3d1e ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa preserve-libs ef207dc62baddfddfd39a164d9797648 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wrapper 4251d4c84c25f59094fd557e0063a974 eutils 2d5b3f4b315094768576b6799e4f926e gnuconfig 9f91b4b0c84e734a87492d4293f03de5 libtool f143db5a74ccd9ca28c1234deffede96 autotools 9e63f92c2a5d867fea55ecb160c7d354 _md5_=3a4ba9b4e7b8efec51cfc79d261fefd3 -- cgit v1.2.3-65-gdbad