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* sci-libs/rtree: Stabilize 1.0.0 arm64, #918389Arthur Zamarin2023-11-241-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/libspatialindex: Stabilize 1.9.3-r2 arm64, #918388Michał Górny2023-11-241-1/+1
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/xylib: Use wxGTK 3.2Pacho Ramos2023-11-241-0/+43
| | | | | | And provide a proper menu entry Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-libs/plplot: add 5.15.0_p6Pacho Ramos2023-11-242-0/+297
| | | | | | | | | | Apply lots of bugfixes from Debian Closes: https://bugs.gentoo.org/814971 Closes: https://bugs.gentoo.org/828434 Closes: https://bugs.gentoo.org/832513 Closes: https://bugs.gentoo.org/891885 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-libs/mathgl: add 8.0.1Pacho Ramos2023-11-243-0/+171
| | | | | | | | | | Closes: https://bugs.gentoo.org/587150 Closes: https://bugs.gentoo.org/886468 Closes: https://bugs.gentoo.org/873457 Closes: https://bugs.gentoo.org/808713 Closes: https://bugs.gentoo.org/780318 Closes: https://bugs.gentoo.org/711154 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-libs/mpfi: update LICENSEMichael Orlitzky2023-11-221-1/+3
| | | | Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/iml: update LICENSEMichael Orlitzky2023-11-221-1/+2
| | | | Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/gdal: Stabilize 3.7.3 x86, #917540Arthur Zamarin2023-11-221-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/gdal: Fix build with dev-libs/libxml2-2.12.0Andreas Sturmlechner2023-11-213-0/+50
| | | | | Closes: https://bugs.gentoo.org/917564 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: VTK_JAVA_SOURCE_VERSION "1.8"Volkmar W. Pogatzki2023-11-212-0/+18
| | | | | | | Closes: https://bugs.gentoo.org/916951 Closes: https://github.com/gentoo/gentoo/pull/33690 Signed-off-by: Volkmar W. Pogatzki <gentoo@pogatzki.net> Signed-off-by: Guilherme Amadio <amadio@gentoo.org>
* sci-libs/hipFFT: use HIP config.Benda Xu2023-11-202-0/+41
| | | | | | | hipFFT is not updated in 5.7.1, and we need to manually backport it. Reference: https://github.com/ROCmSoftwarePlatform/hipFFT/pull/66 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/scikit-learn: Keyword 1.3.2-r1 ppc64, #916250Arthur Zamarin2023-11-191-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/rocRAND: add dev-cpp/benchmark dependency.Benda Xu2023-11-202-6/+8
| | | | | Closes: https://bugs.gentoo.org/913111 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/hipRAND: correct the on disk file name. Bump to 5.7.1.Benda Xu2023-11-203-2/+39
| | | | Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/rocRAND: add 5.7.1 and fix_generator_alignements.patchSv. Lockal2023-11-203-0/+84
| | | | | | Bug: https://github.com/gentoo/gentoo/pull/33400 Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/hipFFT: add 5.7.1Benda Xu2023-11-202-0/+46
| | | | Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/rocFFT: add 5.7.1 and fix test dependencies.Sv. Lockal2023-11-202-0/+151
| | | | | | | | | Cannonicalize the include path as no directory hacks are needed for 5.7.1. Bug: https://github.com/gentoo/gentoo/pull/33400 Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/gdal: fix java-pkg_doso pathSam James2023-11-181-2/+2
| | | | | Closes: https://bugs.gentoo.org/917563 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: Stabilize 3.7.3 ppc64, #917540Sam James2023-11-181-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: Stabilize 3.7.3 arm64, #917540Sam James2023-11-181-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: add 3.8.0Sam James2023-11-182-0/+288
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/geos: add 3.12.1Sam James2023-11-182-0/+47
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: add 3.7.3Sam James2023-11-182-0/+288
| | | | | | | Closes: https://bugs.gentoo.org/910531 Closes: https://bugs.gentoo.org/914176 Closes: https://bugs.gentoo.org/915880 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/tokenizers: add 0.14.1, drop 0.14.0Alfredo Tupone2023-11-162-74/+85
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/vtk: add myself as maintainerPaul Zander2023-11-161-1/+5
| | | | | | Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/33693 Signed-off-by: Florian Schmaus <flow@gentoo.org>
* sci-libs/tokenizers: add 0.14.0Alfredo Tupone2023-11-152-0/+482
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/openblas: add 0.3.25Sam James2023-11-132-0/+198
| | | | | | | | | | | | | * Add some TODOs wrt unbundling lapack and renaming USE=dynamic -> USE=cpudetection like gmp and ffmpeg (should then restrict bindist w/ USE=-cpudetection). * Move most bits out of pkg_setup as configuration doesn't belong there. * Drops obsolete upstreamed patches. * Fix tests sed. Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/arpack: forward ~alphaSam James2023-11-132-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/arpack: add 3.9.1Sam James2023-11-134-5/+115
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/fplll: add 5.4.5Michael Orlitzky2023-11-122-0/+30
| | | | Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/onnx: add ONNX_USE_LITE_PROTO=ONAlfredo Tupone2023-11-111-2/+3
| | | | | Closes: https://bugs.gentoo.org/915843 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/scikit-learn: Add dep on pythran-0.14.0 (bug #917013)Patrick McLean2023-11-101-0/+1
| | | | | Closes: https://bugs.gentoo.org/917013 Signed-off-by: Patrick McLean <chutzpah@gentoo.org>
* sci-libs/scikit-image: Keyword 0.22.0 x86, #916960Arthur Zamarin2023-11-081-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/scikit-image: Keyword 0.22.0 arm64, #916960Sam James2023-11-061-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/scikit-optimize: pep517, numpy-1.24 compatAndrew Ammerlaan2023-11-063-0/+165
| | | | | | Closes: https://bugs.gentoo.org/910028 Closes: https://bugs.gentoo.org/890666 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/scikit-image: add 0.22.0Andrew Ammerlaan2023-11-062-0/+62
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/scikit-learn: add 1.3.2Andrew Ammerlaan2023-11-062-0/+61
| | | | | | Bug: https://bugs.gentoo.org/911369 Closes: https://bugs.gentoo.org/910258 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/indilib: Stabilize 2.0.4 ppc64, #916746Arthur Zamarin2023-11-031-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/onnx: install python modulesAlfredo Tupone2023-11-012-32/+59
| | | | | Closes: https://bugs.gentoo.org/915843 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* Remove BROOT from VERIFY_SIG_OPENPGP_KEY_PATHMike Gilbert2023-10-313-5/+5
| | | | Signed-off-by: Mike Gilbert <floppym@gentoo.org>
* sci-libs/geos: Stabilize 3.11.2 ppc64, #915056Sam James2023-10-271-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cantera: 3.0, mv libcantera_python3_XY.so to /usr/lib*/canteraSergey Torokhov2023-10-272-2/+14
| | | | | | | | | | | Change installation path of libcantera_python3_XY.so plugin from "/usr/$(get_libdir)" to "/usr/$(get_libdir)/cantera" directory and add new direcotry to RPATH to properly working of dlopen() to load plugin from C++ user's code. Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Closes: https://github.com/gentoo/gentoo/pull/32595 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cantera: v3.0.0 add USE="hdf5" for HDF5 container file supportSergey Torokhov2023-10-272-2/+5
| | | | | Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/HighFive: new package v2.7.1 (sci-libs/cantera[hdf5] dep)Sergey Torokhov2023-10-273-0/+85
| | | | | Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cantera: 3.0.0 version bumpSergey Torokhov2023-10-274-1/+167
| | | | | | | | | | | | | | | | | New release is compatible with cython-3. The USE="cti" is dropped due to supplied converters have restricted functionality or doesn't work (yaml2ck) without full python support. Python examples aren't provided within tarball since this release. USE="lapack" support is still restricted using >=sundials-6.5.0. Closes: https://bugs.gentoo.org/913141 Bug: https://bugs.gentoo.org/888667 Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/geos: Stabilize 3.11.2 arm64, #915056Sam James2023-10-261-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/geos: Stabilize 3.11.2 arm, #915056Sam James2023-10-261-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/geos: Stabilize 3.11.2 amd64, #915056Sam James2023-10-261-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libcifpp: add 5.2.2Pacho Ramos2023-10-202-0/+40
| | | | Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-libs/indilib: add 2.0.4Andreas Sturmlechner2023-10-202-0/+77
| | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>