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* sci-libs/votca-tools: version bumpChristoph Junghans2020-01-124-17/+78
| | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 Signed-off-by: Christoph Junghans <junghans@gentoo.org>
* sci-libs/parmetis: Fix LICENSE, add mirror and bindist restrictions.Ulrich Müller2020-01-111-2/+3
| | | | | | Closes: https://bugs.gentoo.org/702362 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Ulrich Müller <ulm@gentoo.org>
* sci-libs/metis: Fix LICENSE, add mirror and bindist restrictions.Ulrich Müller2020-01-111-2/+3
| | | | | | Closes: https://bugs.gentoo.org/702360 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Ulrich Müller <ulm@gentoo.org>
* sci-libs/cantera: add support sci-libs/sundials-5.0, dev-lang/python-3.8band-a-prend2020-01-062-3/+3
| | | | | | | | | Simple fix for Sundials-5.0 and Python-3.8 compatibility. The Sundials-5.0 has the same API as Sundials-4.x for CVODES function. Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Closes: https://github.com/gentoo/gentoo/pull/14126 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* */*: Switch sci-biology proj to cmake.eclassAndreas Sturmlechner2020-01-052-10/+9
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* */*: Clean PYTHON_COMPAT of obsolete implsMichał Górny2020-01-0561-121/+121
| | | | | Closes: https://github.com/gentoo/gentoo/pull/14246 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/dcmtk: version bump 3.6.5 and prefix fixHorea Christian2020-01-052-0/+90
| | | | | | | Package-Manager: Portage-2.3.78, Repoman-2.3.17 Signed-off-by: Horea Christian <chr@chymera.eu> Closes: https://github.com/gentoo/gentoo/pull/13913 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/indilib: 1.8.3 version bumpAndreas Sturmlechner2020-01-042-0/+57
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/scipy: Remove oldDavid Seifert2020-01-038-666/+0
| | | | | | Closes: https://github.com/gentoo/gentoo/pull/14188 Package-Manager: Portage-2.3.83, Repoman-2.3.20 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/opencascade: Switch to cmake.eclassAndreas Sturmlechner2020-01-031-5/+5
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/med: Switch to cmake.eclassAndreas Sturmlechner2020-01-031-6/+6
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/lrslib: Drop 042c-r2 and 051Andreas Sturmlechner2020-01-033-106/+0
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/pgplot: Drop 5.2.2-r6Andreas Sturmlechner2020-01-031-180/+0
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/primegen: Drop 0.97-r1Andreas Sturmlechner2020-01-031-51/+0
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/primegen: x86 stable wrt bug #704428Agostino Sarubbo2020-01-031-1/+1
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/pgplot: x86 stable wrt bug #704426Agostino Sarubbo2020-01-031-1/+1
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/lrslib: x86 stable wrt bug #704424Agostino Sarubbo2020-01-031-1/+1
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/m4ri: simplify openmp check.Michael Orlitzky2020-01-021-3/+1
| | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/m4ri: new package for dense matrix computations over F2.Michael Orlitzky2020-01-023-0/+88
| | | | | | | | | | | | | | | | | | | | This package was imported from the sage-on-gentoo overlay with only a few changes: * Updated from EAPI=6 to EAPI=7, and subsequently moved virtual/pkgconfig to BDEPEND. * Put the --enable-png flag behind USE=png. * Enabled the test suite, which passes out-of-the-box for me. * Update the HOMEPAGE to point to bitbucket; it was redirecting. * Updated LICENSE to GPL-2+ from GPL-2 (based on file headers). The SageMath package can detect and use the system copy of m4ri, which means that this package should eliminate pointless rebuilds of m4ri for users of SageMath on Gentoo. Closes: https://bugs.gentoo.org/704500 Package-Manager: Portage-2.3.79, Repoman-2.3.16 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/givaro: new C++ library for arithmetic/algebraic computing.Michael Orlitzky2020-01-013-0/+70
| | | | | | | | | | | | | | | | | | The latest version givaro-4.1.1 was imported from the sage-on-gentoo overlay with the following changes: * The homepage (which was redirecting) was updated. * The obsolete "bindist" flag was dropped. * The test suite was enabled; it passes without incident for me. * Support for the sse/sse2 CPU flags was added. * USE=doc will now build the API documentation. The SageMath project can detect and use the system copy of givaro, so having this installed will help Gentoo users avoid pointless rebuilds of givaro. Closes: https://bugs.gentoo.org/704458 Package-Manager: Portage-2.3.79, Repoman-2.3.16 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/primegen: amd64 stable wrt bug #704428Agostino Sarubbo2020-01-011-2/+2
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/pgplot: amd64 stable wrt bug #704426Agostino Sarubbo2020-01-011-2/+2
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/lrslib: amd64 stable wrt bug #704424Agostino Sarubbo2020-01-011-2/+2
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/gdal: 2.4.3 version bumpAndreas Sturmlechner2020-01-013-4/+324
| | | | | | | | | | - Drop python2_7 and python3_5 - Drop poppler-0.75.patch and poppler-0.76.patch, supported upstream - Drop 2.3.0-curl.patch, --with-curl --without-threads was fixed, see also: https://github.com/OSGeo/gdal/issues/1386 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/mpfi: amd64 stable wrt bug #703114Agostino Sarubbo2020-01-011-1/+1
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/mpfi: x86 stable wrt bug #703114Agostino Sarubbo2020-01-011-1/+1
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/mpfi: Remove USE="static-libs"David Seifert2020-01-011-7/+4
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/proj: Drop 4.8.0Andreas Sturmlechner2020-01-012-56/+0
| | | | | | | s390 and sparc had no revdeps. Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/indilib: Drop 1.8.2-r1Andreas Sturmlechner2020-01-011-56/+0
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/indilib: Fix udev rules install pathAndreas Sturmlechner2020-01-011-0/+56
| | | | | | | Thanks-to: James Bates <james.h.bates@gmail.com> Closes: https://bugs.gentoo.org/703952 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/libsigrok: Version bump to 0.5.2Sven Wegener2019-12-312-0/+157
| | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 Signed-off-by: Sven Wegener <swegener@gentoo.org>
* sci-libs/libsigrokdecode: Version bump to 0.5.3Sven Wegener2019-12-312-0/+55
| | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 Signed-off-by: Sven Wegener <swegener@gentoo.org>
* sci-libs/libsigrok: Optimize python modulesSven Wegener2019-12-311-0/+1
| | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 Signed-off-by: Sven Wegener <swegener@gentoo.org>
* sci-libs/scotch: x86 stable wrt bug #701532Agostino Sarubbo2019-12-311-1/+1
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/Shapely: amd64 stable wrt bug #704214Agostino Sarubbo2019-12-311-1/+1
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/geos: Drop 3.8.0 (r0)Andreas Sturmlechner2019-12-301-62/+0
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/geos: Drop USE pythonAndreas Sturmlechner2019-12-301-0/+52
| | | | | | | | Long obsolete, use sci-libs/Shapely instead. Closes: https://bugs.gentoo.org/704212 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/scotch: amd64 stable wrt bug #701532Agostino Sarubbo2019-12-301-2/+2
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/scipy: Remove $(usex python_targets_python3_5)David Seifert2019-12-306-6/+2
| | | | | | Package-Manager: Portage-2.3.83, Repoman-2.3.20 Signed-off-by: David Seifert <soap@gentoo.org> Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/geos: Drop 3.7.0Andreas Sturmlechner2019-12-302-62/+0
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/Shapely: Drop unmaintained live ebuildAndreas Sturmlechner2019-12-301-28/+0
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/scikits_learn: Bump, fix buildPatrick Lauer2019-12-294-0/+258
| | | | | | | Fixes #630294 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Patrick Lauer <patrick@gentoo.org>
* sci-libs/gdal: Drop python2_7 supportAndreas Sturmlechner2019-12-291-1/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/scikits_image: Drop python2_7Andreas Sturmlechner2019-12-291-1/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/scikits_image: Drop 0.13.0 (r0)Andreas Sturmlechner2019-12-291-58/+0
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* */*: Switch kde proj packages to cmake.eclassAndreas Sturmlechner2019-12-291-4/+4
| | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/Shapely: Remove oldDavid Seifert2019-12-296-170/+0
| | | | | Package-Manager: Portage-2.3.83, Repoman-2.3.20 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/scikits_learn: Remove oldDavid Seifert2019-12-299-767/+0
| | | | | Package-Manager: Portage-2.3.83, Repoman-2.3.20 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/libsvm: Remove oldDavid Seifert2019-12-292-118/+0
| | | | | Package-Manager: Portage-2.3.83, Repoman-2.3.20 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/ogdi: Drop 3.2.0 (r0)Andreas Sturmlechner2019-12-291-74/+0
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>