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* sci-libs/gklib: Keyword 5.1.1_p20230327-r1 riscv, #905468Jakov Smolić2023-05-031-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/gklib: fix no x86 arches compilejinqiang zhang2023-05-031-0/+10
| | | | | | | Closes: https://bugs.gentoo.org/905642 Signed-off-by: jinqiang zhang <peeweep@0x0.ee> Closes: https://github.com/gentoo/gentoo/pull/30853 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/parmetis: fixup pkgconfig fileAndrew Ammerlaan2023-05-031-2/+2
| | | | | | | | | | | Newer versions of parmetis no longer have gklib bundled. For backwards compatibility add gklib to the pkgconfig file for software that still assumes that gklib is part of parmetis. Bug: https://bugs.gentoo.org/905632 Closes: https://bugs.gentoo.org/704348 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/metis: fixup pkgconfig fileAndrew Ammerlaan2023-05-031-2/+2
| | | | | | | | | | | Newer versions of metis no longer have gklib bundled. For backwards compatibility add gklib to the pkgconfig file for software that still assumes that gklib is part of metis. Closes: https://bugs.gentoo.org/905632 Bug: https://bugs.gentoo.org/704348 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/gmsh: 4.11.1 fix GCC-13 compatibilitySergey Torokhov2023-05-022-1/+33
| | | | | | | | Closes: https://bugs.gentoo.org/905445 Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Closes: https://github.com/gentoo/gentoo/pull/30839 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/parmetis: Keyword 4.0.3_p20230326 x86, #905468Arthur Zamarin2023-05-021-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/metis: Keyword 5.2.1 x86, #905468Arthur Zamarin2023-05-021-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/gklib: Keyword 5.1.1_p20230327-r1 x86, #905468Arthur Zamarin2023-05-021-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/gklib: respect user flagsAndrew Ammerlaan2023-05-022-0/+52
| | | | | Closes: https://bugs.gentoo.org/905469 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/parmetis: add 4.0.3_p20230326Andrew Ammerlaan2023-05-025-0/+164
| | | | | | | | the license indicates we probably still need the fetch restriction. Closes: https://bugs.gentoo.org/905318 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/metis: add 5.2.1Andrew Ammerlaan2023-05-025-0/+162
| | | | | Bug: https://bugs.gentoo.org/905318 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/gklib: new package, add 5.1.1_p20230327Andrew Ammerlaan2023-05-024-0/+46
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/gmsh: 4.11.1 version bumpSergey Torokhov2023-05-012-1/+135
| | | | | | Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Closes: https://github.com/gentoo/gentoo/pull/30804 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/blis: add github upstream metadataSam James2023-05-011-0/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/scikit-optimize: drop 0.8.1Sam James2023-05-012-27/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/blis: drop 0.6.0, 0.8.1Sam James2023-05-014-239/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/numkit: add 1.2.3Sam James2023-05-012-0/+27
| | | | | | Closes: https://bugs.gentoo.org/809776 Closes: https://bugs.gentoo.org/897220 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/pastix: add gitlab.inria to HOMEPAGE tooSam James2023-05-012-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/pastix: update SRC_URI (gforge is gone)Sam James2023-05-011-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/pastix: update HOMEPAGESam James2023-05-012-3/+3
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/pastix: enable py3.11Sam James2023-05-011-1/+1
| | | | | Closes: https://bugs.gentoo.org/897222 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libsvm: Stabilize 3.30 ppc, #904629Sam James2023-05-011-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libsvm: Stabilize 3.30 ppc64, #904629Sam James2023-05-011-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libsvm: Stabilize 3.30 amd64, #904629Sam James2023-05-011-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libsvm: Stabilize 3.30 x86, #904629Sam James2023-05-011-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libcifpp: drop 2.0.4-r1, 3.0.0Pacho Ramos2023-04-253-67/+0
| | | | Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-libs/libcifpp: Fix build with gcc-13Pacho Ramos2023-04-252-0/+26
| | | | | Closes: https://bugs.gentoo.org/897978 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-libs/libqalculate: add 4.6.1Andrew Udvare2023-04-252-0/+80
| | | | | Signed-off-by: Andrew Udvare <audvare@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/caffe2: fix cudnn include pathAlfredo Tupone2023-04-242-0/+13
| | | | | Closes: https://bugs.gentoo.org/904882 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/hdf5: fix install w/ USE=mpiSam James2023-04-231-5/+0
| | | | | | | The 'perf' tool was dropped w/ https://github.com/HDFGroup/hdf5/commit/8c6a3ce1d7006a633a8973f6ca827c664d7a1ac9. Closes: https://bugs.gentoo.org/904516 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/caffe2: disable nvfuserAlfredo Tupone2023-04-231-0/+1
| | | | | Closes: https://bugs.gentoo.org/904886 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/proj: explicitly disable network testsSam James2023-04-231-0/+1
| | | | | | | | Noticed after Alpine did this. It's not an issue for us as its check fails but we don't want it to even try, especially as network-sandbox doesn't exist on all platforms. Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/caffe2: sandbox errorAlfredo Tupone2023-04-231-0/+1
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/med: fix doc installation pathBernd Waibel2023-04-231-6/+1
| | | | | | | | | | | - install documentation correctly into ${PF} - drop a sed statement to fix library installation path, which has become obsolete Closes: https://bugs.gentoo.org/904522 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/30716 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/gdal: add 3.6.4Sam James2023-04-233-0/+263
| | | | | | | Closes: https://bugs.gentoo.org/900106 Closes: https://bugs.gentoo.org/904534 Thanks-to: Michael Uleysky <uleysky@gmail.com> (abseil patch) Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/med: extend patch to hdf5 1.14Andrew Ammerlaan2023-04-222-0/+231
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/xdrfile: treecleanDavid Seifert2023-04-213-36/+0
| | | | | | | | | Closes: https://bugs.gentoo.org/683166 Closes: https://bugs.gentoo.org/814658 Closes: https://bugs.gentoo.org/834966 Closes: https://bugs.gentoo.org/898262 Bug: https://bugs.gentoo.org/903559 Signed-off-by: David Seifert <soap@gentoo.org>
* Revert "sci-libs/cgnslib: restrict to hdf5<14"Sam James2023-04-201-1/+1
| | | | | | | | | | This reverts commit 311e3fd6822338b4313af27521bc57451b8cecc0. Not needed anymore and a better solution would've been to mask newer hdf5 given it was broken, not cgnslib. Bug: https://bugs.gentoo.org/904515 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf5: fix installed CMake files (exclude temporary include dir for ↵Sam James2023-04-202-0/+35
| | | | | | | | build) Closes: https://bugs.gentoo.org/904515 Closes: https://bugs.gentoo.org/904691 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/med: restrict to hdf5<14Andrew Ammerlaan2023-04-181-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/cgnslib: restrict to hdf5<14Andrew Ammerlaan2023-04-181-1/+1
| | | | | Bug: https://bugs.gentoo.org/904515 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/libcifpp: drop 5.0.5Pacho Ramos2023-04-182-35/+0
| | | | Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-libs/ignition-math: bump to 6.14.0Alexis Ballier2023-04-183-15/+2
| | | | Signed-off-by: Alexis Ballier <aballier@gentoo.org>
* sci-libs/hdf5: add 1.14.0Sam James2023-04-182-0/+120
| | | | | Closes: https://bugs.gentoo.org/863089 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/symengine: keyword 0.10.1 for ~loongWANG Xuerui2023-04-161-1/+1
| | | | Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/plplot: fix configure w/ clang 16Sam James2023-04-142-0/+19
| | | | | Closes: https://bugs.gentoo.org/898258 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf5: fix configure w/ clang 16Sam James2023-04-142-0/+31
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/transformers: new package, add 4.27.4Alfredo Tupone2023-04-133-0/+48
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/caffe2: to build with gcc-13Alfredo Tupone2023-04-122-0/+42
| | | | | Closes: https://bugs.gentoo.org/904086 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/kineto: include stdintAlfredo Tupone2023-04-123-5/+19
| | | | | Closes: https://bugs.gentoo.org/904085 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>