diff options
Diffstat (limited to 'sci-biology/wise/wise-2.4.0_alpha.ebuild')
-rw-r--r-- | sci-biology/wise/wise-2.4.0_alpha.ebuild | 73 |
1 files changed, 0 insertions, 73 deletions
diff --git a/sci-biology/wise/wise-2.4.0_alpha.ebuild b/sci-biology/wise/wise-2.4.0_alpha.ebuild deleted file mode 100644 index c37a8972e84e..000000000000 --- a/sci-biology/wise/wise-2.4.0_alpha.ebuild +++ /dev/null @@ -1,73 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit epatch toolchain-funcs versionator - -DESCRIPTION="Intelligent algorithms for DNA searches" -HOMEPAGE="http://www.ebi.ac.uk/Wise2/" -SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/${PN}2/${PN}$(delete_version_separator 3).tar.gz - https://dev.gentoo.org/~mgorny/dist/${P}-patchset.tar.bz2" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="doc static-libs" - -RDEPEND="~sci-biology/hmmer-2.3.2" -DEPEND=" - ${RDEPEND} - app-shells/tcsh - dev-lang/perl - virtual/latex-base" - -S="${WORKDIR}"/${PN}$(delete_version_separator 3) - -src_prepare() { - epatch \ - "${WORKDIR}"/${P}-patchset/${P}-glibc-2.10.patch \ - "${WORKDIR}"/${P}-patchset/${P}-cflags.patch - cd "${S}"/docs || die - cat "${S}"/src/models/*.tex "${S}"/src/dynlibsrc/*.tex | perl gettex.pl > temp.tex || die - cat wise2api.tex temp.tex apiend.tex > api.tex || die - epatch "${WORKDIR}"/${P}-patchset/${PN}-api.tex.patch -} - -src_compile() { - emake \ - -C src \ - CC="$(tc-getCC)" \ - all - if use doc; then - cd "${S}"/docs || die - for i in api appendix dynamite wise2 wise3arch; do - latex ${i} || die - latex ${i} || die - dvips ${i}.dvi -o || die - done - fi -} - -src_test() { - cd "${S}"/src || die - WISECONFIGDIR="${S}/wisecfg" emake test -} - -src_install() { - dobin "${S}"/src/bin/* "${S}"/src/dynlibsrc/testgendb - use static-libs && \ - dolib.a \ - "${S}"/src/base/libwisebase.a \ - "${S}"/src/dynlibsrc/libdyna.a \ - "${S}"/src/models/libmodel.a - - insinto /usr/share/${PN} - doins -r "${S}"/wisecfg - - if use doc; then - insinto /usr/share/doc/${PF} - doins "${S}"/docs/*.ps - fi - newenvd "${WORKDIR}"/${P}-patchset/${PN}-env 24wise || die "Failed to install env file" -} |