diff options
Diffstat (limited to 'sci-biology/seqan/seqan-1.4.2-r1.ebuild')
-rw-r--r-- | sci-biology/seqan/seqan-1.4.2-r1.ebuild | 79 |
1 files changed, 0 insertions, 79 deletions
diff --git a/sci-biology/seqan/seqan-1.4.2-r1.ebuild b/sci-biology/seqan/seqan-1.4.2-r1.ebuild deleted file mode 100644 index 3a7f55c710c3..000000000000 --- a/sci-biology/seqan/seqan-1.4.2-r1.ebuild +++ /dev/null @@ -1,79 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) - -inherit cmake-utils python-any-r1 versionator - -DESCRIPTION="C++ Sequence Analysis Library" -HOMEPAGE="http://www.seqan.de/" -SRC_URI="http://packages.${PN}.de/${PN}-src/${PN}-src-${PV}.tar.gz" - -SLOT="$(get_version_component_range 1-2)" -LICENSE="BSD GPL-3" -KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" -IUSE="cpu_flags_x86_sse4_1 test" -RESTRICT="!test? ( test )" -REQUIRED_USE="cpu_flags_x86_sse4_1" - -RDEPEND=" - app-arch/bzip2 - sys-libs/zlib" -DEPEND=" - ${RDEPEND} - test? ( - $(python_gen_any_dep 'dev-python/nose[${PYTHON_USEDEP}]') - ${PYTHON_DEPS} - )" - -PATCHES=( - "${FILESDIR}/${P}-shared.patch" - "${FILESDIR}/${P}-include.patch" - "${FILESDIR}/${P}-buildsystem.patch" -) - -pkg_setup() { - use test && python-any-r1_pkg_setup -} - -src_prepare() { - # pkg-config file, taken from seqan 2.1 - cp "${FILESDIR}"/${PN}.pc.in ${PN}-${SLOT}.pc || die - sed -e "s#@CMAKE_INSTALL_PREFIX@#${EPREFIX}/usr#" \ - -e "s#includedir=\${prefix}/include#includedir=\${prefix}/include/${PN}-${SLOT}#" \ - -e "s#@CMAKE_PROJECT_NAME@#${PN}#" \ - -e "s#@SEQAN_VERSION_STRING@#${PV}#" \ - -i ${PN}-${SLOT}.pc || die - - rm -f util/cmake/FindZLIB.cmake || die - cmake-utils_src_prepare -} - -src_configure() { - local mycmakeargs=( - -DBoost_NO_BOOST_CMAKE=ON - -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY - -DSEQAN_NO_DOX=ON - ) - cmake-utils_src_configure -} - -src_install() { - cmake-utils_src_install - - # SLOT header such that different seqan versions can be used in parallel - mkdir "${ED}"/usr/include/${PN}-${SLOT} || die - mv "${ED}"/usr/include/{${PN},${PN}-${SLOT}/} || die - - # pkg-config file - insinto /usr/share/pkgconfig/ - doins ${PN}-${SLOT}.pc -} - -pkg_postinst() { - einfo "${CATEGORY}/${PF} is only intended as support library for older" - einfo "bioinformatics tools relying on the SeqAn 1.* API. Please develop" - einfo "any new software against the latest SeqAn release and not this one." -} |