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Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/amos-3.1.0-r22
-rw-r--r--metadata/md5-cache/sci-biology/bedtools-2.26.02
-rw-r--r--metadata/md5-cache/sci-biology/biopandas-0.1.42
-rw-r--r--metadata/md5-cache/sci-biology/biopython-1.682
-rw-r--r--metadata/md5-cache/sci-biology/last-2992
-rw-r--r--metadata/md5-cache/sci-biology/meme-4.11.2_p26
-rw-r--r--metadata/md5-cache/sci-biology/mummer-3.9.4_alpha2
-rw-r--r--metadata/md5-cache/sci-biology/pysam-0.9.02
-rw-r--r--metadata/md5-cache/sci-biology/samtools-0.1.19-r22
-rw-r--r--metadata/md5-cache/sci-biology/samtools-0.1.20-r36
-rw-r--r--metadata/md5-cache/sci-biology/samtools-1.02
-rw-r--r--metadata/md5-cache/sci-biology/samtools-1.0-r12
-rw-r--r--metadata/md5-cache/sci-biology/samtools-1.12
-rw-r--r--metadata/md5-cache/sci-biology/samtools-1.22
-rw-r--r--metadata/md5-cache/sci-biology/samtools-1.3-r12
-rw-r--r--metadata/md5-cache/sci-biology/seqan-1.4.2-r14
-rw-r--r--metadata/md5-cache/sci-biology/seqan-2.2.0-r14
-rw-r--r--metadata/md5-cache/sci-biology/shrimp-2.2.34
-rw-r--r--metadata/md5-cache/sci-biology/tophat-2.1.1-r36
-rw-r--r--metadata/md5-cache/sci-biology/vienna-rna-2.1.12
-rw-r--r--metadata/md5-cache/sci-biology/vienna-rna-2.1.82
21 files changed, 30 insertions, 30 deletions
diff --git a/metadata/md5-cache/sci-biology/amos-3.1.0-r2 b/metadata/md5-cache/sci-biology/amos-3.1.0-r2
index b4b75c389b4a..cef0c614714a 100644
--- a/metadata/md5-cache/sci-biology/amos-3.1.0-r2
+++ b/metadata/md5-cache/sci-biology/amos-3.1.0-r2
@@ -10,5 +10,5 @@ RDEPEND=qt4? ( dev-qt/qtcore:4 ) dev-perl/DBI dev-perl/Statistics-Descriptive sc
SLOT=0
SRC_URI=mirror://sourceforge/amos/amos-3.1.0.tar.gz https://dev.gentoo.org/~soap/distfiles/amos-3.1.0-fix-c++14.patch.bz2
_eclass_exported_funcs=src_configure:- src_compile:- src_install:-
-_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
_md5_=7c03cf026ee8384c15d8a787be2d0c41
diff --git a/metadata/md5-cache/sci-biology/bedtools-2.26.0 b/metadata/md5-cache/sci-biology/bedtools-2.26.0
index 6bba373a1254..81657de62733 100644
--- a/metadata/md5-cache/sci-biology/bedtools-2.26.0
+++ b/metadata/md5-cache/sci-biology/bedtools-2.26.0
@@ -10,5 +10,5 @@ RDEPEND=sys-libs/zlib
SLOT=0
SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz
_eclass_exported_funcs=pkg_setup:python-any-r1 src_configure:- src_install:-
-_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 python-any-r1 1c20f9b800324335a8e3b137363362e8 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 python-any-r1 1c20f9b800324335a8e3b137363362e8 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
_md5_=42d15d14939e6481d16c75da1c73550e
diff --git a/metadata/md5-cache/sci-biology/biopandas-0.1.4 b/metadata/md5-cache/sci-biology/biopandas-0.1.4
index 28314b375254..d81f598fe773 100644
--- a/metadata/md5-cache/sci-biology/biopandas-0.1.4
+++ b/metadata/md5-cache/sci-biology/biopandas-0.1.4
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targe
SLOT=0
SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.1.4.tar.gz
_eclass_exported_funcs=src_prepare:distutils-r1 src_configure:distutils-r1 src_compile:distutils-r1 src_test:distutils-r1 src_install:distutils-r1
-_eclasses_=distutils-r1 f1707af2d2ad4cf700a9e690de6ed855 eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 xdg-utils e2b2bd56125ce8cf59ce30c642b59d48
+_eclasses_=distutils-r1 f1707af2d2ad4cf700a9e690de6ed855 eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 xdg-utils e2b2bd56125ce8cf59ce30c642b59d48
_md5_=e69dc9e12fffb1f0e54c73219f0753cb
diff --git a/metadata/md5-cache/sci-biology/biopython-1.68 b/metadata/md5-cache/sci-biology/biopython-1.68
index 6dc47aff9a0e..8a63f9d03b78 100644
--- a/metadata/md5-cache/sci-biology/biopython-1.68
+++ b/metadata/md5-cache/sci-biology/biopython-1.68
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_pypy python_targets_python2_7 python_targets_py
SLOT=0
SRC_URI=http://www.biopython.org/DIST/biopython-1.68.tar.gz
_eclass_exported_funcs=pkg_postinst:- src_prepare:distutils-r1 src_configure:distutils-r1 src_compile:distutils-r1 src_test:distutils-r1 src_install:distutils-r1
-_eclasses_=distutils-r1 f1707af2d2ad4cf700a9e690de6ed855 eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 xdg-utils e2b2bd56125ce8cf59ce30c642b59d48
+_eclasses_=distutils-r1 f1707af2d2ad4cf700a9e690de6ed855 eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 xdg-utils e2b2bd56125ce8cf59ce30c642b59d48
_md5_=2d6e484286d13acfee2452276259d598
diff --git a/metadata/md5-cache/sci-biology/last-299 b/metadata/md5-cache/sci-biology/last-299
index 52e81a50f75a..42f725288ecb 100644
--- a/metadata/md5-cache/sci-biology/last-299
+++ b/metadata/md5-cache/sci-biology/last-299
@@ -9,5 +9,5 @@ LICENSE=GPL-3
SLOT=0
SRC_URI=http://last.cbrc.jp/last-299.zip
_eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
_md5_=63fdd8e13d2df571e24d48edb9eb0ab9
diff --git a/metadata/md5-cache/sci-biology/meme-4.11.2_p2 b/metadata/md5-cache/sci-biology/meme-4.11.2_p2
index 5b3cbda488ee..d30fd08ab065 100644
--- a/metadata/md5-cache/sci-biology/meme-4.11.2_p2
+++ b/metadata/md5-cache/sci-biology/meme-4.11.2_p2
@@ -1,15 +1,15 @@
DEFINED_PHASES=configure install prepare setup test
-DEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] app-shells/tcsh dev-libs/libxml2:2 dev-libs/libxslt sys-libs/zlib app-text/ghostscript-gpl media-gfx/imagemagick dev-lang/perl:= dev-perl/HTML-Parser dev-perl/HTML-Template dev-perl/Log-Log4perl dev-perl/Math-CDF dev-perl/XML-Compile-SOAP dev-perl/XML-Compile-WSDL11 dev-perl/XML-Parser dev-perl/XML-Simple virtual/perl-Data-Dumper virtual/perl-Exporter virtual/perl-File-Path virtual/perl-File-Spec virtual/perl-File-Temp virtual/perl-Getopt-Long virtual/perl-Scalar-List-Utils virtual/perl-Time-HiRes mpi? ( virtual/mpi ) !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] app-shells/tcsh dev-libs/libxml2:2 dev-libs/libxslt sys-libs/zlib app-text/ghostscript-gpl media-gfx/imagemagick dev-lang/perl:= dev-perl/HTML-Parser dev-perl/HTML-Template dev-perl/Log-Log4perl dev-perl/Math-CDF dev-perl/XML-Compile-SOAP dev-perl/XML-Compile-WSDL11 dev-perl/XML-Parser dev-perl/XML-Simple virtual/perl-Data-Dumper virtual/perl-Exporter virtual/perl-File-Path virtual/perl-File-Spec virtual/perl-File-Temp virtual/perl-Getopt-Long virtual/perl-Scalar-List-Utils virtual/perl-Time-HiRes mpi? ( virtual/mpi ) !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
DESCRIPTION=The MEME/MAST system - Motif discovery and search
EAPI=6
HOMEPAGE=http://meme-suite.org/tools/meme
IUSE=debug doc examples mpi python_targets_python2_7
KEYWORDS=~amd64 ~x86
LICENSE=meme
-RDEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] app-shells/tcsh dev-libs/libxml2:2 dev-libs/libxslt sys-libs/zlib app-text/ghostscript-gpl media-gfx/imagemagick dev-lang/perl:= dev-perl/HTML-Parser dev-perl/HTML-Template dev-perl/Log-Log4perl dev-perl/Math-CDF dev-perl/XML-Compile-SOAP dev-perl/XML-Compile-WSDL11 dev-perl/XML-Parser dev-perl/XML-Simple virtual/perl-Data-Dumper virtual/perl-Exporter virtual/perl-File-Path virtual/perl-File-Spec virtual/perl-File-Temp virtual/perl-Getopt-Long virtual/perl-Scalar-List-Utils virtual/perl-Time-HiRes mpi? ( virtual/mpi )
+RDEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] app-shells/tcsh dev-libs/libxml2:2 dev-libs/libxslt sys-libs/zlib app-text/ghostscript-gpl media-gfx/imagemagick dev-lang/perl:= dev-perl/HTML-Parser dev-perl/HTML-Template dev-perl/Log-Log4perl dev-perl/Math-CDF dev-perl/XML-Compile-SOAP dev-perl/XML-Compile-WSDL11 dev-perl/XML-Parser dev-perl/XML-Simple virtual/perl-Data-Dumper virtual/perl-Exporter virtual/perl-File-Path virtual/perl-File-Spec virtual/perl-File-Temp virtual/perl-Getopt-Long virtual/perl-Scalar-List-Utils virtual/perl-Time-HiRes mpi? ( virtual/mpi )
REQUIRED_USE=python_targets_python2_7
SLOT=0
SRC_URI=http://meme-suite.org/meme-software/4.11.2/meme_4.11.2.tar.gz
_eclass_exported_funcs=pkg_setup:- src_prepare:- src_configure:- src_test:- src_install:-
-_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c eutils ea170b525f6a38a006be05c9d9429f13 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 perl-functions aac50de73be0a80ebe780e0b20850130 python-single-r1 19a74c6b5c191723a997dc7e0cc6bb09 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c
+_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c eutils ea170b525f6a38a006be05c9d9429f13 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 perl-functions aac50de73be0a80ebe780e0b20850130 python-single-r1 19a74c6b5c191723a997dc7e0cc6bb09 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c
_md5_=c78491ef841d3801bb03701669942094
diff --git a/metadata/md5-cache/sci-biology/mummer-3.9.4_alpha b/metadata/md5-cache/sci-biology/mummer-3.9.4_alpha
index 4a76fc20e1bd..b8277954d27a 100644
--- a/metadata/md5-cache/sci-biology/mummer-3.9.4_alpha
+++ b/metadata/md5-cache/sci-biology/mummer-3.9.4_alpha
@@ -11,5 +11,5 @@ REQUIRED_USE=python? ( || ( python_targets_python2_7 python_targets_python3_4 py
SLOT=0
SRC_URI=https://github.com/gmarcais/mummer/releases/download/v3.9.4alpha/mummer-3.9.4alpha.tar.gz -> mummer-3.9.4_alpha.tar.gz
_eclass_exported_funcs=pkg_pretend:- pkg_setup:- src_configure:- src_compile:- src_install:-
-_eclasses_=multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 perl-functions aac50de73be0a80ebe780e0b20850130 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
+_eclasses_=multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 perl-functions aac50de73be0a80ebe780e0b20850130 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
_md5_=f9f59e9f624628103b59f154925fd5fd
diff --git a/metadata/md5-cache/sci-biology/pysam-0.9.0 b/metadata/md5-cache/sci-biology/pysam-0.9.0
index 857f82f05492..ca0d0db2ba2f 100644
--- a/metadata/md5-cache/sci-biology/pysam-0.9.0
+++ b/metadata/md5-cache/sci-biology/pysam-0.9.0
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targe
SLOT=0
SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.9.0.tar.gz -> pysam-0.9.0.tar.gz
_eclass_exported_funcs=src_prepare:- src_configure:distutils-r1 src_compile:- src_test:distutils-r1 src_install:distutils-r1
-_eclasses_=distutils-r1 f1707af2d2ad4cf700a9e690de6ed855 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 xdg-utils e2b2bd56125ce8cf59ce30c642b59d48
+_eclasses_=distutils-r1 f1707af2d2ad4cf700a9e690de6ed855 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 xdg-utils e2b2bd56125ce8cf59ce30c642b59d48
_md5_=4347b0e64a8de2968bb9d80fc701d2ea
diff --git a/metadata/md5-cache/sci-biology/samtools-0.1.19-r2 b/metadata/md5-cache/sci-biology/samtools-0.1.19-r2
index 75d7b3c79abf..518802186c4a 100644
--- a/metadata/md5-cache/sci-biology/samtools-0.1.19-r2
+++ b/metadata/md5-cache/sci-biology/samtools-0.1.19-r2
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
SLOT=0
SRC_URI=mirror://sourceforge/samtools/samtools-0.1.19.tar.bz2
_eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
_md5_=386582eb3ff9435a92dd20bdbd248cbc
diff --git a/metadata/md5-cache/sci-biology/samtools-0.1.20-r3 b/metadata/md5-cache/sci-biology/samtools-0.1.20-r3
index cf40672c369c..a3bffd504b3e 100644
--- a/metadata/md5-cache/sci-biology/samtools-0.1.20-r3
+++ b/metadata/md5-cache/sci-biology/samtools-0.1.20-r3
@@ -1,15 +1,15 @@
DEFINED_PHASES=compile install postinst prepare setup
-DEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] sys-libs/ncurses:0= dev-lang/perl virtual/pkgconfig
+DEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] sys-libs/ncurses:0= dev-lang/perl virtual/pkgconfig
DESCRIPTION=Utilities for analysing and manipulating the SAM/BAM alignment formats
EAPI=6
HOMEPAGE=http://samtools.sourceforge.net/
IUSE=examples python_targets_python2_7
KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos
LICENSE=MIT
-RDEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] sys-libs/ncurses:0= dev-lang/perl
+RDEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] sys-libs/ncurses:0= dev-lang/perl
REQUIRED_USE=python_targets_python2_7
SLOT=0.1-legacy
SRC_URI=https://github.com/samtools/samtools/archive/0.1.20.tar.gz -> samtools-0.1.20.tar.gz
_eclass_exported_funcs=pkg_postinst:- pkg_setup:python-single-r1 src_prepare:- src_compile:- src_install:-
-_eclasses_=multilib 165fc17c38d1b11dac2008280dab6e80 python-single-r1 19a74c6b5c191723a997dc7e0cc6bb09 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
+_eclasses_=multilib 165fc17c38d1b11dac2008280dab6e80 python-single-r1 19a74c6b5c191723a997dc7e0cc6bb09 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
_md5_=1e7dbcbc9661826d1b34cbe736e9f360
diff --git a/metadata/md5-cache/sci-biology/samtools-1.0 b/metadata/md5-cache/sci-biology/samtools-1.0
index 4b6ee6b5e2e3..651cb3acdb9c 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.0
+++ b/metadata/md5-cache/sci-biology/samtools-1.0
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
SLOT=0
SRC_URI=mirror://sourceforge/samtools/samtools-1.0.tar.bz2
_eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
_md5_=db99b61f10fd031a95c3ba948438e007
diff --git a/metadata/md5-cache/sci-biology/samtools-1.0-r1 b/metadata/md5-cache/sci-biology/samtools-1.0-r1
index a8adff733910..f1b58ac3b0df 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.0-r1
+++ b/metadata/md5-cache/sci-biology/samtools-1.0-r1
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
SLOT=0
SRC_URI=mirror://sourceforge/samtools/samtools-1.0.tar.bz2
_eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
_md5_=cf94159379e0b14da650368a72d518dd
diff --git a/metadata/md5-cache/sci-biology/samtools-1.1 b/metadata/md5-cache/sci-biology/samtools-1.1
index a8fcd51d5af3..9e18304f38d5 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.1
+++ b/metadata/md5-cache/sci-biology/samtools-1.1
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
SLOT=0
SRC_URI=mirror://sourceforge/samtools/samtools-1.1.tar.bz2
_eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
_md5_=9233bca436af5041a19d8326e816d011
diff --git a/metadata/md5-cache/sci-biology/samtools-1.2 b/metadata/md5-cache/sci-biology/samtools-1.2
index 755cdd02130e..ef3a33469372 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.2
+++ b/metadata/md5-cache/sci-biology/samtools-1.2
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
SLOT=0
SRC_URI=mirror://sourceforge/samtools/samtools-1.2.tar.bz2
_eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
_md5_=75d7314287663a3f5ea5b17060bd2081
diff --git a/metadata/md5-cache/sci-biology/samtools-1.3-r1 b/metadata/md5-cache/sci-biology/samtools-1.3-r1
index ab3dcc6af1e1..37c4da0f1ed1 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.3-r1
+++ b/metadata/md5-cache/sci-biology/samtools-1.3-r1
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python2_7 )
SLOT=0
SRC_URI=mirror://sourceforge/samtools/samtools-1.3.tar.bz2
_eclass_exported_funcs=src_prepare:- src_compile:- src_test:- src_install:-
-_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c libtool 4890219c51da247200223277f993e054 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
+_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c libtool 4890219c51da247200223277f993e054 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
_md5_=bf4d95b9d61aabecfc5d1eb4039ebc7d
diff --git a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
index ba67103d35f5..95bda00834aa 100644
--- a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
+++ b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
@@ -1,5 +1,5 @@
DEFINED_PHASES=compile configure install postinst prepare setup test
-DEPEND=sys-libs/zlib app-arch/bzip2 test? ( dev-python/nose[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] ) sys-devel/make >=dev-util/cmake-3.5.2
+DEPEND=sys-libs/zlib app-arch/bzip2 test? ( dev-python/nose[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] ) sys-devel/make >=dev-util/cmake-3.5.2
DESCRIPTION=C++ Sequence Analysis Library
EAPI=6
HOMEPAGE=http://www.seqan.de/
@@ -10,5 +10,5 @@ REQUIRED_USE=python_targets_python2_7 cpu_flags_x86_sse4_1
SLOT=1.4
SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-1.4.2.tar.gz
_eclass_exported_funcs=pkg_postinst:- pkg_setup:python-single-r1 src_prepare:- src_configure:- src_compile:cmake-utils src_test:cmake-utils src_install:-
-_eclasses_=cmake-utils fa4d8052a1ccf4fbbfa76361bffebe42 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b python-single-r1 19a74c6b5c191723a997dc7e0cc6bb09 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c
+_eclasses_=cmake-utils fa4d8052a1ccf4fbbfa76361bffebe42 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b python-single-r1 19a74c6b5c191723a997dc7e0cc6bb09 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c
_md5_=14b7b2b979dd4f5008d8ba766ce1da8c
diff --git a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1
index 9db9b850a6e8..640dfbc2f5f3 100644
--- a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1
+++ b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1
@@ -1,5 +1,5 @@
DEFINED_PHASES=compile configure install prepare setup test
-DEPEND=app-arch/bzip2 sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2 >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] doc? ( dev-python/sphinx[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] ) test? ( dev-python/nose[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] ) sys-devel/make >=dev-util/cmake-3.5.2
+DEPEND=app-arch/bzip2 sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2 >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] doc? ( dev-python/sphinx[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] ) test? ( dev-python/nose[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] ) sys-devel/make >=dev-util/cmake-3.5.2
DESCRIPTION=C++ Sequence Analysis Library
EAPI=6
HOMEPAGE=http://www.seqan.de/
@@ -11,5 +11,5 @@ REQUIRED_USE=doc? ( python_targets_python2_7 ) test? ( python_targets_python2_7
SLOT=0
SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-2.2.0.tar.gz
_eclass_exported_funcs=pkg_setup:python-single-r1 src_prepare:- src_configure:- src_compile:- src_test:cmake-utils src_install:-
-_eclasses_=cmake-utils fa4d8052a1ccf4fbbfa76361bffebe42 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b python-single-r1 19a74c6b5c191723a997dc7e0cc6bb09 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c
+_eclasses_=cmake-utils fa4d8052a1ccf4fbbfa76361bffebe42 eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b python-single-r1 19a74c6b5c191723a997dc7e0cc6bb09 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 versionator 99ae9d758cbe7cfed19170e7d48f5a9c
_md5_=f51ed68479ff5ef5bbcdd896b74fc1ae
diff --git a/metadata/md5-cache/sci-biology/shrimp-2.2.3 b/metadata/md5-cache/sci-biology/shrimp-2.2.3
index 903ca1fcda34..cc0767be8876 100644
--- a/metadata/md5-cache/sci-biology/shrimp-2.2.3
+++ b/metadata/md5-cache/sci-biology/shrimp-2.2.3
@@ -6,10 +6,10 @@ HOMEPAGE=http://compbio.cs.toronto.edu/shrimp/
IUSE=custom-cflags +cpu_flags_x86_sse2 python_targets_python2_7
KEYWORDS=~amd64 ~x86
LICENSE=shrimp
-RDEPEND=!sci-mathematics/cado-nfs >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)]
+RDEPEND=!sci-mathematics/cado-nfs >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)]
REQUIRED_USE=python_targets_python2_7
SLOT=0
SRC_URI=http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_2_3.src.tar.gz
_eclass_exported_funcs=pkg_pretend:- pkg_setup:- src_prepare:- src_compile:- src_install:-
-_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 python-single-r1 19a74c6b5c191723a997dc7e0cc6bb09 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
+_eclasses_=eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 multilib 165fc17c38d1b11dac2008280dab6e80 python-single-r1 19a74c6b5c191723a997dc7e0cc6bb09 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
_md5_=4f8021ced803372cddeb27e1a3b6521c
diff --git a/metadata/md5-cache/sci-biology/tophat-2.1.1-r3 b/metadata/md5-cache/sci-biology/tophat-2.1.1-r3
index 038dcf67e92b..22bd0fef8611 100644
--- a/metadata/md5-cache/sci-biology/tophat-2.1.1-r3
+++ b/metadata/md5-cache/sci-biology/tophat-2.1.1-r3
@@ -1,15 +1,15 @@
DEFINED_PHASES=configure install postinst prepare setup
-DEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 >=sys-devel/autoconf-archive-2016.09.16 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 >=sys-devel/autoconf-archive-2016.09.16 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
DESCRIPTION=Python-based splice junction mapper for RNA-Seq reads using bowtie2
EAPI=6
HOMEPAGE=https://ccb.jhu.edu/software/tophat/
IUSE=debug python_targets_python2_7
KEYWORDS=~amd64 ~x86
LICENSE=Artistic
-RDEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2
+RDEPEND=>=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2
REQUIRED_USE=python_targets_python2_7
SLOT=0
SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz
_eclass_exported_funcs=pkg_postinst:- pkg_setup:python-single-r1 src_prepare:- src_configure:- src_install:-
-_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 python-single-r1 19a74c6b5c191723a997dc7e0cc6bb09 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
+_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c eutils ea170b525f6a38a006be05c9d9429f13 flag-o-matic 7366202dd55cb8f018f5d450d54e7749 libtool 4890219c51da247200223277f993e054 multilib 165fc17c38d1b11dac2008280dab6e80 python-single-r1 19a74c6b5c191723a997dc7e0cc6bb09 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
_md5_=0182a9a0e1edc7fff427a466a0747e4e
diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
index 6241b6ddffca..55bb8702427a 100644
--- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
+++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1
@@ -11,5 +11,5 @@ REQUIRED_USE=python? ( || ( python_targets_python2_7 ) )
SLOT=0
SRC_URI=http://www.tbi.univie.ac.at/~ronny/RNA/ViennaRNA-2.1.1.tar.gz
_eclass_exported_funcs=src_unpack:perl-module src_prepare:- src_configure:- src_compile:- src_test:- src_install:-
-_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb distutils-r1 f1707af2d2ad4cf700a9e690de6ed855 eutils ea170b525f6a38a006be05c9d9429f13 libtool 4890219c51da247200223277f993e054 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b perl-functions aac50de73be0a80ebe780e0b20850130 perl-module f6549146ea31a902e20b5f2e6f244358 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 unpacker 45d07319df5f40ee6af58418b0f930be xdg-utils e2b2bd56125ce8cf59ce30c642b59d48
+_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb distutils-r1 f1707af2d2ad4cf700a9e690de6ed855 eutils ea170b525f6a38a006be05c9d9429f13 libtool 4890219c51da247200223277f993e054 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b perl-functions aac50de73be0a80ebe780e0b20850130 perl-module f6549146ea31a902e20b5f2e6f244358 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 unpacker 45d07319df5f40ee6af58418b0f930be xdg-utils e2b2bd56125ce8cf59ce30c642b59d48
_md5_=6d978aca9747776d0b4fb8d647081e1e
diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
index 4a57c87df694..b39393645841 100644
--- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
+++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
@@ -11,5 +11,5 @@ REQUIRED_USE=python? ( || ( python_targets_python2_7 ) )
SLOT=0
SRC_URI=http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.8.tar.gz
_eclass_exported_funcs=src_unpack:perl-module src_prepare:- src_configure:- src_compile:- src_test:- src_install:-
-_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb distutils-r1 f1707af2d2ad4cf700a9e690de6ed855 eutils ea170b525f6a38a006be05c9d9429f13 libtool 4890219c51da247200223277f993e054 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b perl-functions aac50de73be0a80ebe780e0b20850130 perl-module f6549146ea31a902e20b5f2e6f244358 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d142329ab093dd20c1dd0edb5f094108 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 unpacker 45d07319df5f40ee6af58418b0f930be xdg-utils e2b2bd56125ce8cf59ce30c642b59d48
+_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c autotools-utils 419811142edf3516b0d0cf1a254d93cb distutils-r1 f1707af2d2ad4cf700a9e690de6ed855 eutils ea170b525f6a38a006be05c9d9429f13 libtool 4890219c51da247200223277f993e054 multibuild 742139c87a9fa3766f0c2b155e5522bf multilib 165fc17c38d1b11dac2008280dab6e80 multiprocessing 7bb10a841be2368af0c00f27dd67560b perl-functions aac50de73be0a80ebe780e0b20850130 perl-module f6549146ea31a902e20b5f2e6f244358 python-r1 dcd61d7a5c283f18cfe763552b09eb88 python-utils-r1 d275302cd06aedef2ba08f81f3104206 toolchain-funcs 1b1da0c45c555989dc5d832b54880783 unpacker 45d07319df5f40ee6af58418b0f930be xdg-utils e2b2bd56125ce8cf59ce30c642b59d48
_md5_=f3373f37e05509bac04eae39f236e5cc