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| author |   David Seifert <soap@gentoo.org> | 2020-08-03 18:54:32 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2020-08-03 18:54:32 +0200 |
| commit | 90152a8f4a9c81520a37f329793c6ed8d1dc963e (patch) | |
| tree | 1388e4e1e20251055e70c87afd1d92356d42f1b0 /sci-biology | |
| parent | sci-biology/pysam: Bump to 0.16.0.1 (diff) | |
| download | gentoo-90152a8f4a9c81520a37f329793c6ed8d1dc963e.tar.gz gentoo-90152a8f4a9c81520a37f329793c6ed8d1dc963e.tar.bz2 gentoo-90152a8f4a9c81520a37f329793c6ed8d1dc963e.zip | |
sci-biology/HTSeq: Bump to 0.12.4
Bug: https://bugs.gentoo.org/696484
Bug: https://bugs.gentoo.org/718466
Package-Manager: Portage-3.0.1, Repoman-2.3.23
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/HTSeq/HTSeq-0.12.4.ebuild | 33 | ||||
| -rw-r--r-- | sci-biology/HTSeq/Manifest | 1 |
2 files changed, 34 insertions, 0 deletions
diff --git a/sci-biology/HTSeq/HTSeq-0.12.4.ebuild b/sci-biology/HTSeq/HTSeq-0.12.4.ebuild new file mode 100644 index 000000000000..1f5693d9a139 --- /dev/null +++ b/sci-biology/HTSeq/HTSeq-0.12.4.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{6..9} ) + +inherit distutils-r1 + +DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files" +HOMEPAGE="https://htseq.readthedocs.io/" + +if [[ ${PV} == *9999 ]]; then + inherit git-r3 + EGIT_REPO_URI="https://github.com/htseq/htseq.git" +else + SRC_URI="https://github.com/htseq/htseq/archive/release_${PV}.tar.gz -> ${P}.tar.gz" + + S="${WORKDIR}"/htseq-release_${PV} + KEYWORDS="~amd64" +fi + +LICENSE="GPL-3+" +SLOT="0" + +RDEPEND=" + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + sci-biology/pysam[${PYTHON_USEDEP}]" +DEPEND="${RDEPEND}" +BDEPEND=" + >=dev-lang/swig-3.0.8 + dev-python/cython[${PYTHON_USEDEP}]" diff --git a/sci-biology/HTSeq/Manifest b/sci-biology/HTSeq/Manifest index d521aef0c0b0..bc4ffd5f3603 100644 --- a/sci-biology/HTSeq/Manifest +++ b/sci-biology/HTSeq/Manifest @@ -1 +1,2 @@ +DIST HTSeq-0.12.4.tar.gz 36187218 BLAKE2B 27be4e8783f9e32c10e23ae812069b489eb11dfa4058db43b5db4b8089792351901255103e4d4de1bcf866da3acd13e742adf8d35a9b70305aa156c70dde0837 SHA512 ec4a1a7e9177f103465840ffa9f936a5e887ffd17760b99d4cbdfd5a88e2ab44275fadfcbee153aadc6e828de7be205ed7a07f3a0548457b7c66826341c3ca64 DIST HTSeq-0.9.1.tar.gz 596941 BLAKE2B 6865c36056bff2008ae8bf18d0ac81dbf721fb97cdcc8bbd9150356fc80ae99e0cb872033fac274b40df3d1c95e9bcfd83c4f7d033184725596ffc96081e26d1 SHA512 ec3e1ec9cf66918f2afacf7997ab5da02015896ddd97260f5abec8343a9013cf6e857872be38b2cd3bb5bde655abe602a3c22c32448190f32e1a8f1153a19344 |