proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

4 files changed, 70 insertions, 0 deletions

diff --git a/sci-biology/prodigal/Manifest b/sci-biology/prodigal/Manifest
new file mode 100644
index 000000000000..c7ebb5b77b50
--- /dev/null
+++ b/sci-biology/prodigal/Manifest
@@ -0,0 +1,2 @@
+DIST prodigal.v2_50.tar.gz 496654 RMD160 335ef065f1b03c6e063172c1c7eb6343402ee8de SHA1 ca7f7a9fa8d2bf1b5a0965cde25385704c96bc4e SHA256 0220dcc740c49941f9c2536b3aa81d3193f885bfd05c694f805d90d2cefbc421
+DIST prodigal.v2_60.tar.gz 615326 RMD160 bcc876588dfc6fddd9e7c0a433347f8604d7db67 SHA1 23a45dafedd98c04f9a4edbe82b037120644eaa2 SHA256 f18b093e0ac3b9ba40fc4d7bb76c2e20f2edb6d265451c82e3396138c9aac331
diff --git a/sci-biology/prodigal/metadata.xml b/sci-biology/prodigal/metadata.xml
new file mode 100644
index 000000000000..6e8b2ee66e66
--- /dev/null
+++ b/sci-biology/prodigal/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+	<upstream>
+		<remote-id type="google-code">prodigal</remote-id>
+	</upstream>
+</pkgmetadata>
diff --git a/sci-biology/prodigal/prodigal-2.50.ebuild b/sci-biology/prodigal/prodigal-2.50.ebuild
new file mode 100644
index 000000000000..8e28c0a24196
--- /dev/null
+++ b/sci-biology/prodigal/prodigal-2.50.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI="2"
+
+MY_PV=${PV//./_}
+
+DESCRIPTION="Prokaryotic Dynamic Programming Genefinding Algorithm"
+HOMEPAGE="http://prodigal.ornl.gov/ http://code.google.com/p/prodigal/"
+SRC_URI="http://prodigal.googlecode.com/files/prodigal.v${MY_PV}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND=""
+
+S="${WORKDIR}/prodigal.v${MY_PV}"
+
+src_prepare() {
+	sed -i -e 's/CFLAGS=/CFLAGS+=/' -e 's/LDFLAGS=/LDFLAGS+=/' Makefile || die
+}
+
+src_install() {
+	dobin prodigal
+	dodoc README CHANGES
+}
diff --git a/sci-biology/prodigal/prodigal-2.60.ebuild b/sci-biology/prodigal/prodigal-2.60.ebuild
new file mode 100644
index 000000000000..21c788eaccff
--- /dev/null
+++ b/sci-biology/prodigal/prodigal-2.60.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI="2"
+
+MY_PV=${PV//./_}
+
+DESCRIPTION="Prokaryotic Dynamic Programming Genefinding Algorithm"
+HOMEPAGE="http://prodigal.ornl.gov/ http://code.google.com/p/prodigal/"
+SRC_URI="http://prodigal.googlecode.com/files/prodigal.v${MY_PV}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND=""
+
+S="${WORKDIR}/prodigal.v${MY_PV}"
+
+src_prepare() {
+	sed -i -e 's/CFLAGS=/CFLAGS+=/' -e 's/LDFLAGS=/LDFLAGS+=/' Makefile || die
+}
+
+src_install() {
+	dobin prodigal
+	dodoc README CHANGES
+}