2022-06-10 12:47:59 UTC

3 files changed, 47 insertions, 0 deletions

diff --git a/metadata/md5-cache/sci-biology/bcftools-1.15.1 b/metadata/md5-cache/sci-biology/bcftools-1.15.1
new file mode 100644
index 000000000000..a1eec4dfa89b
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/bcftools-1.15.1
@@ -0,0 +1,16 @@
+BDEPEND=python_single_target_python3_8? ( >=dev-lang/python-3.8.12_p1-r1:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.9-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.0_p1-r1:3.10 )
+DEFINED_PHASES=configure prepare setup
+DEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) =sci-libs/htslib-1.15.1*:= sys-libs/zlib python_single_target_python3_8? ( >=dev-lang/python-3.8.12_p1-r1:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.9-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.0_p1-r1:3.10 )
+DESCRIPTION=Utilities for variant calling and manipulating VCF and BCF files
+EAPI=8
+HOMEPAGE=http://www.htslib.org
+INHERIT=python-single-r1
+IUSE=python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10
+KEYWORDS=~amd64 ~x86
+LICENSE=MIT
+RDEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[python_targets_python3_8(-)] ) python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) =sci-libs/htslib-1.15.1*:= sys-libs/zlib python_single_target_python3_8? ( >=dev-lang/python-3.8.12_p1-r1:3.8 ) python_single_target_python3_9? ( >=dev-lang/python-3.9.9-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.0_p1-r1:3.10 )
+REQUIRED_USE=^^ ( python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 )
+SLOT=0
+SRC_URI=https://github.com/samtools/bcftools/releases/download/1.15.1/bcftools-1.15.1.tar.bz2
+_eclasses_=multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	toolchain-funcs	fd9cde67030b26e479eeadaced488253	multilib	4fbbbc98f236f1b43acd99476bc3cd85	python-utils-r1	648fe6a039e87233d7f48da72cadb76f	python-single-r1	a5747fe6dc0651d95cb78eddd5e160a8
+_md5_=a991b200539f7c26af7f584fe62e90f5
diff --git a/metadata/md5-cache/sci-biology/pysam-0.19.1 b/metadata/md5-cache/sci-biology/pysam-0.19.1
new file mode 100644
index 000000000000..0de0143ebe3c
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/pysam-0.19.1
@@ -0,0 +1,17 @@
+BDEPEND=test? ( =sci-biology/bcftools-1.15.1* =sci-biology/samtools-1.15.1* ) test? ( =sci-libs/htslib-1.15.1*:= >=dev-python/pytest-7.0.1[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.12_p1-r1:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.9-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.0_p1-r1:3.10 ) >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+DEFINED_PHASES=compile configure install prepare test
+DEPEND==sci-libs/htslib-1.15.1*:= dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/setuptools[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+DESCRIPTION=Python interface for the SAM/BAM sequence alignment and mapping format
+EAPI=8
+HOMEPAGE=https://github.com/pysam-developers/pysam https://pypi.org/project/pysam/
+INHERIT=distutils-r1
+IUSE=test python_targets_python3_8 python_targets_python3_9 python_targets_python3_10
+KEYWORDS=~amd64 ~x86
+LICENSE=MIT
+RDEPEND==sci-libs/htslib-1.15.1*:= python_targets_python3_8? ( >=dev-lang/python-3.8.12_p1-r1:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.9-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.0_p1-r1:3.10 )
+REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 )
+RESTRICT=!test? ( test )
+SLOT=0
+SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.19.1.tar.gz -> pysam-0.19.1.gh.tar.gz
+_eclasses_=multibuild	d26d81f242cb193d899a72bca423d0bd	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	toolchain-funcs	fd9cde67030b26e479eeadaced488253	multilib	4fbbbc98f236f1b43acd99476bc3cd85	python-utils-r1	648fe6a039e87233d7f48da72cadb76f	python-r1	8638751691200e941f26fe0ac3aef1d1	distutils-r1	197b6711aac35c87e9536c55ad3b909d
+_md5_=6abe0e48c82ed861430be9c31b6dd481
diff --git a/metadata/md5-cache/sci-biology/samtools-1.15.1 b/metadata/md5-cache/sci-biology/samtools-1.15.1
new file mode 100644
index 000000000000..5c99c026fd75
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/samtools-1.15.1
@@ -0,0 +1,14 @@
+BDEPEND=virtual/pkgconfig
+DEFINED_PHASES=compile configure install prepare
+DEPEND=dev-lang/perl =sci-libs/htslib-1.15.1*:= sys-libs/ncurses:=[unicode(+)] sys-libs/zlib
+DESCRIPTION=Utilities for analysing and manipulating the SAM/BAM alignment formats
+EAPI=8
+HOMEPAGE=http://www.htslib.org/
+INHERIT=toolchain-funcs
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos
+LICENSE=MIT
+RDEPEND=dev-lang/perl =sci-libs/htslib-1.15.1*:= sys-libs/ncurses:=[unicode(+)] sys-libs/zlib
+SLOT=0
+SRC_URI=https://github.com/samtools/samtools/releases/download/1.15.1/samtools-1.15.1.tar.bz2
+_eclasses_=toolchain-funcs	fd9cde67030b26e479eeadaced488253	multilib	4fbbbc98f236f1b43acd99476bc3cd85
+_md5_=c347f2e80f020ce72d8f21220d346f1f