summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorRepository mirror & CI <repomirrorci@gentoo.org>2022-07-12 21:47:33 +0000
committerRepository mirror & CI <repomirrorci@gentoo.org>2022-07-12 21:47:33 +0000
commitb8347ef03956044af221ed8846013a38aaec928a (patch)
tree0b03bd6cd58c1a3e775680af1809a3ed7cca7eba /metadata/md5-cache/sci-biology
parentMerge updates from master (diff)
downloadgentoo-b8347ef03956044af221ed8846013a38aaec928a.tar.gz
gentoo-b8347ef03956044af221ed8846013a38aaec928a.tar.bz2
gentoo-b8347ef03956044af221ed8846013a38aaec928a.zip
2022-07-12 21:47:32 UTC
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/HTSeq-2.0.22
-rw-r--r--metadata/md5-cache/sci-biology/HTSeq-99992
-rw-r--r--metadata/md5-cache/sci-biology/bcftools-1.15.12
-rw-r--r--metadata/md5-cache/sci-biology/bedtools-2.30.04
-rw-r--r--metadata/md5-cache/sci-biology/biopandas-0.2.72
-rw-r--r--metadata/md5-cache/sci-biology/biopython-1.792
-rw-r--r--metadata/md5-cache/sci-biology/bowtie-2.4.42
-rw-r--r--metadata/md5-cache/sci-biology/pysam-0.19.16
8 files changed, 11 insertions, 11 deletions
diff --git a/metadata/md5-cache/sci-biology/HTSeq-2.0.2 b/metadata/md5-cache/sci-biology/HTSeq-2.0.2
index ede49e4f30be..1b5a8857f02d 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-2.0.2
+++ b/metadata/md5-cache/sci-biology/HTSeq-2.0.2
@@ -13,5 +13,5 @@ REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targe
RESTRICT=!test? ( test ) !test? ( test )
SLOT=0
SRC_URI=https://github.com/htseq/htseq/archive/release_2.0.2.tar.gz -> HTSeq-2.0.2.gh.tar.gz
-_eclasses_=multibuild d26d81f242cb193d899a72bca423d0bd multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 toolchain-funcs e9da88162e7a3c60376e80c2c2adcdfb multilib 4fbbbc98f236f1b43acd99476bc3cd85 python-utils-r1 32313e7e2fbfba8f62a99ef923fc923c python-r1 e2883e4f04f0503cdf7f2954e2bf5e15 distutils-r1 64c5b9cc381383c9c1ef74fb199293ea flag-o-matic a3abd6002fafb3022597be6b8d01f88b
+_eclasses_=multibuild d26d81f242cb193d899a72bca423d0bd multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 toolchain-funcs e9da88162e7a3c60376e80c2c2adcdfb multilib 4fbbbc98f236f1b43acd99476bc3cd85 python-utils-r1 667174e2df1036a5520d3b3b3fb33e98 python-r1 e2883e4f04f0503cdf7f2954e2bf5e15 distutils-r1 a012c7f8c0a9dddadb3a4f56364c8f62 flag-o-matic a3abd6002fafb3022597be6b8d01f88b
_md5_=eaf0038e987d5268b687db2978b9cf87
diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999
index 735dca5c505a..9745de3d22dd 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-9999
+++ b/metadata/md5-cache/sci-biology/HTSeq-9999
@@ -12,5 +12,5 @@ RDEPEND=dev-python/numpy[python_targets_python3_8(-)?,python_targets_python3_9(-
REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 )
RESTRICT=!test? ( test ) !test? ( test )
SLOT=0
-_eclasses_=multibuild d26d81f242cb193d899a72bca423d0bd multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 toolchain-funcs e9da88162e7a3c60376e80c2c2adcdfb multilib 4fbbbc98f236f1b43acd99476bc3cd85 python-utils-r1 32313e7e2fbfba8f62a99ef923fc923c python-r1 e2883e4f04f0503cdf7f2954e2bf5e15 distutils-r1 64c5b9cc381383c9c1ef74fb199293ea flag-o-matic a3abd6002fafb3022597be6b8d01f88b git-r3 b9ac6f96d2a88edb5b351df634dc5e53
+_eclasses_=multibuild d26d81f242cb193d899a72bca423d0bd multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 toolchain-funcs e9da88162e7a3c60376e80c2c2adcdfb multilib 4fbbbc98f236f1b43acd99476bc3cd85 python-utils-r1 667174e2df1036a5520d3b3b3fb33e98 python-r1 e2883e4f04f0503cdf7f2954e2bf5e15 distutils-r1 a012c7f8c0a9dddadb3a4f56364c8f62 flag-o-matic a3abd6002fafb3022597be6b8d01f88b git-r3 b9ac6f96d2a88edb5b351df634dc5e53
_md5_=eaf0038e987d5268b687db2978b9cf87
diff --git a/metadata/md5-cache/sci-biology/bcftools-1.15.1 b/metadata/md5-cache/sci-biology/bcftools-1.15.1
index 6c5fc1c9f8de..cf0226b53c86 100644
--- a/metadata/md5-cache/sci-biology/bcftools-1.15.1
+++ b/metadata/md5-cache/sci-biology/bcftools-1.15.1
@@ -12,5 +12,5 @@ RDEPEND=dev-lang/perl python_single_target_python3_8? ( dev-python/matplotlib[py
REQUIRED_USE=^^ ( python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 )
SLOT=0
SRC_URI=https://github.com/samtools/bcftools/releases/download/1.15.1/bcftools-1.15.1.tar.bz2
-_eclasses_=multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 toolchain-funcs e9da88162e7a3c60376e80c2c2adcdfb multilib 4fbbbc98f236f1b43acd99476bc3cd85 python-utils-r1 32313e7e2fbfba8f62a99ef923fc923c python-single-r1 a5747fe6dc0651d95cb78eddd5e160a8
+_eclasses_=multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 toolchain-funcs e9da88162e7a3c60376e80c2c2adcdfb multilib 4fbbbc98f236f1b43acd99476bc3cd85 python-utils-r1 667174e2df1036a5520d3b3b3fb33e98 python-single-r1 a5747fe6dc0651d95cb78eddd5e160a8
_md5_=a991b200539f7c26af7f584fe62e90f5
diff --git a/metadata/md5-cache/sci-biology/bedtools-2.30.0 b/metadata/md5-cache/sci-biology/bedtools-2.30.0
index 7ecf3d1a288d..7654c0781511 100644
--- a/metadata/md5-cache/sci-biology/bedtools-2.30.0
+++ b/metadata/md5-cache/sci-biology/bedtools-2.30.0
@@ -1,4 +1,4 @@
-BDEPEND=|| ( >=dev-lang/python-3.11.0_beta3:3.11 >=dev-lang/python-3.10.4:3.10 >=dev-lang/python-3.9.12:3.9 >=dev-lang/python-3.8.13:3.8 ) test? ( >=sci-biology/samtools-1.10:0 )
+BDEPEND=|| ( >=dev-lang/python-3.11.0_beta4:3.11 >=dev-lang/python-3.10.4:3.10 >=dev-lang/python-3.9.12:3.9 >=dev-lang/python-3.8.13:3.8 ) test? ( >=sci-biology/samtools-1.10:0 )
DEFINED_PHASES=configure install setup
DEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib
DESCRIPTION=Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats
@@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools-2.30.0.tar.gz
-_eclasses_=multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 toolchain-funcs e9da88162e7a3c60376e80c2c2adcdfb multilib 4fbbbc98f236f1b43acd99476bc3cd85 python-utils-r1 32313e7e2fbfba8f62a99ef923fc923c python-any-r1 a3e9c0524a795d7f2767a2cf12a2e8c0
+_eclasses_=multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 toolchain-funcs e9da88162e7a3c60376e80c2c2adcdfb multilib 4fbbbc98f236f1b43acd99476bc3cd85 python-utils-r1 667174e2df1036a5520d3b3b3fb33e98 python-any-r1 a3e9c0524a795d7f2767a2cf12a2e8c0
_md5_=5f18ddd41275559b1783fee4a2405f1f
diff --git a/metadata/md5-cache/sci-biology/biopandas-0.2.7 b/metadata/md5-cache/sci-biology/biopandas-0.2.7
index 3e7d78f73885..4ce9e8ce928c 100644
--- a/metadata/md5-cache/sci-biology/biopandas-0.2.7
+++ b/metadata/md5-cache/sci-biology/biopandas-0.2.7
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targe
RESTRICT=!test? ( test ) !test? ( test )
SLOT=0
SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.2.7.tar.gz
-_eclasses_=multibuild d26d81f242cb193d899a72bca423d0bd multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 toolchain-funcs e9da88162e7a3c60376e80c2c2adcdfb multilib 4fbbbc98f236f1b43acd99476bc3cd85 python-utils-r1 32313e7e2fbfba8f62a99ef923fc923c python-r1 e2883e4f04f0503cdf7f2954e2bf5e15 distutils-r1 64c5b9cc381383c9c1ef74fb199293ea
+_eclasses_=multibuild d26d81f242cb193d899a72bca423d0bd multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 toolchain-funcs e9da88162e7a3c60376e80c2c2adcdfb multilib 4fbbbc98f236f1b43acd99476bc3cd85 python-utils-r1 667174e2df1036a5520d3b3b3fb33e98 python-r1 e2883e4f04f0503cdf7f2954e2bf5e15 distutils-r1 a012c7f8c0a9dddadb3a4f56364c8f62
_md5_=493935812e002415b6fce30c9e9dc8f8
diff --git a/metadata/md5-cache/sci-biology/biopython-1.79 b/metadata/md5-cache/sci-biology/biopython-1.79
index a5823f573a14..3bbd10779143 100644
--- a/metadata/md5-cache/sci-biology/biopython-1.79
+++ b/metadata/md5-cache/sci-biology/biopython-1.79
@@ -12,5 +12,5 @@ RDEPEND=dev-python/matplotlib[python_targets_python3_8(-)?,python_targets_python
REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 )
SLOT=0
SRC_URI=mirror://pypi/b/biopython/biopython-1.79.tar.gz
-_eclasses_=multibuild d26d81f242cb193d899a72bca423d0bd multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 toolchain-funcs e9da88162e7a3c60376e80c2c2adcdfb multilib 4fbbbc98f236f1b43acd99476bc3cd85 python-utils-r1 32313e7e2fbfba8f62a99ef923fc923c python-r1 e2883e4f04f0503cdf7f2954e2bf5e15 distutils-r1 64c5b9cc381383c9c1ef74fb199293ea optfeature d524f291c80f9d21ad80fe978e3ca760
+_eclasses_=multibuild d26d81f242cb193d899a72bca423d0bd multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 toolchain-funcs e9da88162e7a3c60376e80c2c2adcdfb multilib 4fbbbc98f236f1b43acd99476bc3cd85 python-utils-r1 667174e2df1036a5520d3b3b3fb33e98 python-r1 e2883e4f04f0503cdf7f2954e2bf5e15 distutils-r1 a012c7f8c0a9dddadb3a4f56364c8f62 optfeature d524f291c80f9d21ad80fe978e3ca760
_md5_=89d2124a2c9f76eda9c399f23c96a8b8
diff --git a/metadata/md5-cache/sci-biology/bowtie-2.4.4 b/metadata/md5-cache/sci-biology/bowtie-2.4.4
index 2cd56e22f424..0d1fb5899898 100644
--- a/metadata/md5-cache/sci-biology/bowtie-2.4.4
+++ b/metadata/md5-cache/sci-biology/bowtie-2.4.4
@@ -12,5 +12,5 @@ RDEPEND=python_single_target_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_
REQUIRED_USE=cpu_flags_x86_sse2 ^^ ( python_single_target_python3_8 python_single_target_python3_9 python_single_target_python3_10 )
SLOT=2
SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.4.4/bowtie2-2.4.4-source.zip
-_eclasses_=multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 toolchain-funcs e9da88162e7a3c60376e80c2c2adcdfb multilib 4fbbbc98f236f1b43acd99476bc3cd85 python-utils-r1 32313e7e2fbfba8f62a99ef923fc923c python-single-r1 a5747fe6dc0651d95cb78eddd5e160a8
+_eclasses_=multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 toolchain-funcs e9da88162e7a3c60376e80c2c2adcdfb multilib 4fbbbc98f236f1b43acd99476bc3cd85 python-utils-r1 667174e2df1036a5520d3b3b3fb33e98 python-single-r1 a5747fe6dc0651d95cb78eddd5e160a8
_md5_=a169406c93e64d9cae6cbb8ad262f62b
diff --git a/metadata/md5-cache/sci-biology/pysam-0.19.1 b/metadata/md5-cache/sci-biology/pysam-0.19.1
index 91fe3db0269b..bd4c19704914 100644
--- a/metadata/md5-cache/sci-biology/pysam-0.19.1
+++ b/metadata/md5-cache/sci-biology/pysam-0.19.1
@@ -1,4 +1,4 @@
-BDEPEND=test? ( =sci-biology/bcftools-1.15.1* =sci-biology/samtools-1.15.1* ) test? ( =sci-libs/htslib-1.15.1*:= >=dev-python/pytest-7.1.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.0_beta3:3.11 ) >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?]
+BDEPEND=test? ( =sci-biology/bcftools-1.15.1* =sci-biology/samtools-1.15.1* ) test? ( =sci-libs/htslib-1.15.1*:= >=dev-python/pytest-7.1.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.0_beta4:3.11 ) >=dev-python/setuptools-42.0.2[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?]
DEFINED_PHASES=compile configure install prepare test
DEPEND==sci-libs/htslib-1.15.1*:= dev-python/cython[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/setuptools[python_targets_python3_8(-)?,python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?]
DESCRIPTION=Python interface for the SAM/BAM sequence alignment and mapping format
@@ -8,10 +8,10 @@ INHERIT=distutils-r1
IUSE=test python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 python_targets_python3_11
KEYWORDS=~amd64 ~x86
LICENSE=MIT
-RDEPEND==sci-libs/htslib-1.15.1*:= python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.0_beta3:3.11 )
+RDEPEND==sci-libs/htslib-1.15.1*:= python_targets_python3_8? ( >=dev-lang/python-3.8.13:3.8 ) python_targets_python3_9? ( >=dev-lang/python-3.9.12:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.4:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.0_beta4:3.11 )
REQUIRED_USE=|| ( python_targets_python3_8 python_targets_python3_9 python_targets_python3_10 python_targets_python3_11 )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.19.1.tar.gz -> pysam-0.19.1.gh.tar.gz
-_eclasses_=multibuild d26d81f242cb193d899a72bca423d0bd multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 toolchain-funcs e9da88162e7a3c60376e80c2c2adcdfb multilib 4fbbbc98f236f1b43acd99476bc3cd85 python-utils-r1 32313e7e2fbfba8f62a99ef923fc923c python-r1 e2883e4f04f0503cdf7f2954e2bf5e15 distutils-r1 64c5b9cc381383c9c1ef74fb199293ea
+_eclasses_=multibuild d26d81f242cb193d899a72bca423d0bd multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 toolchain-funcs e9da88162e7a3c60376e80c2c2adcdfb multilib 4fbbbc98f236f1b43acd99476bc3cd85 python-utils-r1 667174e2df1036a5520d3b3b3fb33e98 python-r1 e2883e4f04f0503cdf7f2954e2bf5e15 distutils-r1 a012c7f8c0a9dddadb3a4f56364c8f62
_md5_=baed35c86cd8709cd139815786cd17ac