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authorRepository mirror & CI <repomirrorci@gentoo.org>2021-09-02 17:08:15 +0000
committerRepository mirror & CI <repomirrorci@gentoo.org>2021-09-02 17:08:15 +0000
commit61757c5727b01354894545a1990c3773928eb9a8 (patch)
tree5dd6cc9906cfe4b1de370a43c5a0e6fce8f23bd9 /metadata/md5-cache/sci-biology
parentMerge updates from master (diff)
downloadgentoo-61757c5727b01354894545a1990c3773928eb9a8.tar.gz
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2021-09-02 17:08:07 UTC
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/bamtools-2.5.24
-rw-r--r--metadata/md5-cache/sci-biology/bamtools-99994
-rw-r--r--metadata/md5-cache/sci-biology/express-1.5.14
-rw-r--r--metadata/md5-cache/sci-biology/fasttree-2.1.114
-rw-r--r--metadata/md5-cache/sci-biology/kallisto-0.46.24
-rw-r--r--metadata/md5-cache/sci-biology/seqan-2.4.0-r14
-rw-r--r--metadata/md5-cache/sci-biology/uchime-4.2.404
7 files changed, 14 insertions, 14 deletions
diff --git a/metadata/md5-cache/sci-biology/bamtools-2.5.2 b/metadata/md5-cache/sci-biology/bamtools-2.5.2
index 661f947320a5..210e65e4e6e5 100644
--- a/metadata/md5-cache/sci-biology/bamtools-2.5.2
+++ b/metadata/md5-cache/sci-biology/bamtools-2.5.2
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig dev-util/ninja dev-util/cmake
+BDEPEND=virtual/pkgconfig dev-util/ninja >=dev-util/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare test
DEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
DESCRIPTION=A programmer's API and an end-user's toolkit for handling BAM files
@@ -10,5 +10,5 @@ LICENSE=MIT
RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
SLOT=0/2.5.2
SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.5.2.tar.gz -> bamtools-2.5.2.tar.gz
-_eclasses_=toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 97566c1a256d07b00848aa767e38a352 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic 4134b5c0fb719b9161d10bdaba9e09e5 xdg-utils 27f9a2f19502b925ac117bd657aa2979 cmake 518e4c9a6a38dfd7afc54b6a7c5de3da
+_eclasses_=toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 97566c1a256d07b00848aa767e38a352 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic 4134b5c0fb719b9161d10bdaba9e09e5 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 xdg-utils 27f9a2f19502b925ac117bd657aa2979 cmake 11fee991ab428a3370e5c20fa8231fb6
_md5_=efdfbdbf4181a018ee9965d5c16be71f
diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999
index 49b292192d9d..d26fb9356546 100644
--- a/metadata/md5-cache/sci-biology/bamtools-9999
+++ b/metadata/md5-cache/sci-biology/bamtools-9999
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig dev-util/ninja dev-util/cmake >=dev-vcs/git-1.8.2.1[curl]
+BDEPEND=virtual/pkgconfig dev-util/ninja >=dev-util/cmake-3.20.5 >=dev-vcs/git-1.8.2.1[curl]
DEFINED_PHASES=compile configure install prepare test unpack
DEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
DESCRIPTION=A programmer's API and an end-user's toolkit for handling BAM files
@@ -9,5 +9,5 @@ LICENSE=MIT
PROPERTIES=live
RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
SLOT=0/9999
-_eclasses_=toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 97566c1a256d07b00848aa767e38a352 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic 4134b5c0fb719b9161d10bdaba9e09e5 xdg-utils 27f9a2f19502b925ac117bd657aa2979 cmake 518e4c9a6a38dfd7afc54b6a7c5de3da git-r3 cc875b0c1e9b3bdac1af0f82f3ba29da
+_eclasses_=toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 97566c1a256d07b00848aa767e38a352 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic 4134b5c0fb719b9161d10bdaba9e09e5 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 xdg-utils 27f9a2f19502b925ac117bd657aa2979 cmake 11fee991ab428a3370e5c20fa8231fb6 git-r3 cc875b0c1e9b3bdac1af0f82f3ba29da
_md5_=a2299dc6ca850c1c25582656d7586681
diff --git a/metadata/md5-cache/sci-biology/express-1.5.1 b/metadata/md5-cache/sci-biology/express-1.5.1
index 2d871fcb3f6b..db2f71d69507 100644
--- a/metadata/md5-cache/sci-biology/express-1.5.1
+++ b/metadata/md5-cache/sci-biology/express-1.5.1
@@ -1,4 +1,4 @@
-BDEPEND=dev-util/ninja dev-util/cmake
+BDEPEND=dev-util/ninja >=dev-util/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare test
DEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sci-biology/bamtools sys-libs/zlib
DESCRIPTION=Streaming RNA-Seq Analysis
@@ -10,5 +10,5 @@ LICENSE=Artistic
RDEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sci-biology/bamtools sys-libs/zlib
SLOT=0
SRC_URI=https://pachterlab.github.io/eXpress/downloads/express-1.5.1/express-1.5.1-src.tgz
-_eclasses_=toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 97566c1a256d07b00848aa767e38a352 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic 4134b5c0fb719b9161d10bdaba9e09e5 xdg-utils 27f9a2f19502b925ac117bd657aa2979 cmake 518e4c9a6a38dfd7afc54b6a7c5de3da
+_eclasses_=toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 97566c1a256d07b00848aa767e38a352 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic 4134b5c0fb719b9161d10bdaba9e09e5 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 xdg-utils 27f9a2f19502b925ac117bd657aa2979 cmake 11fee991ab428a3370e5c20fa8231fb6
_md5_=b4fcbc714ea460615318f4baa4bc347a
diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.11 b/metadata/md5-cache/sci-biology/fasttree-2.1.11
index ec2829966665..a658f1e05f29 100644
--- a/metadata/md5-cache/sci-biology/fasttree-2.1.11
+++ b/metadata/md5-cache/sci-biology/fasttree-2.1.11
@@ -1,4 +1,4 @@
-BDEPEND=dev-util/ninja dev-util/cmake
+BDEPEND=dev-util/ninja >=dev-util/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare test unpack
DESCRIPTION=Fast inference of approximately-maximum-likelihood phylogenetic trees
EAPI=7
@@ -10,5 +10,5 @@ LICENSE=GPL-2
REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 )
SLOT=0
SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.11.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.11.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.11.tar.gz
-_eclasses_=toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 97566c1a256d07b00848aa767e38a352 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic 4134b5c0fb719b9161d10bdaba9e09e5 xdg-utils 27f9a2f19502b925ac117bd657aa2979 cmake 518e4c9a6a38dfd7afc54b6a7c5de3da
+_eclasses_=toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 97566c1a256d07b00848aa767e38a352 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic 4134b5c0fb719b9161d10bdaba9e09e5 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 xdg-utils 27f9a2f19502b925ac117bd657aa2979 cmake 11fee991ab428a3370e5c20fa8231fb6
_md5_=4a94b8db43f0aadb5ece67757ccbe635
diff --git a/metadata/md5-cache/sci-biology/kallisto-0.46.2 b/metadata/md5-cache/sci-biology/kallisto-0.46.2
index b13288bd403e..ad3f73dc9618 100644
--- a/metadata/md5-cache/sci-biology/kallisto-0.46.2
+++ b/metadata/md5-cache/sci-biology/kallisto-0.46.2
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig dev-util/ninja dev-util/cmake
+BDEPEND=virtual/pkgconfig dev-util/ninja >=dev-util/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare test
DEPEND=sci-libs/htslib:= sys-libs/zlib:= hdf5? ( sci-libs/hdf5:= ) test? ( dev-cpp/catch:0 sci-libs/hdf5 )
DESCRIPTION=Near-optimal RNA-Seq quantification
@@ -12,5 +12,5 @@ RDEPEND=sci-libs/htslib:= sys-libs/zlib:= hdf5? ( sci-libs/hdf5:= )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://github.com/pachterlab/kallisto/archive/v0.46.2.tar.gz -> kallisto-0.46.2.tar.gz
-_eclasses_=toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 97566c1a256d07b00848aa767e38a352 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic 4134b5c0fb719b9161d10bdaba9e09e5 xdg-utils 27f9a2f19502b925ac117bd657aa2979 cmake 518e4c9a6a38dfd7afc54b6a7c5de3da
+_eclasses_=toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 97566c1a256d07b00848aa767e38a352 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic 4134b5c0fb719b9161d10bdaba9e09e5 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 xdg-utils 27f9a2f19502b925ac117bd657aa2979 cmake 11fee991ab428a3370e5c20fa8231fb6
_md5_=1b739cad0275e6dc5a320723611b78e9
diff --git a/metadata/md5-cache/sci-biology/seqan-2.4.0-r1 b/metadata/md5-cache/sci-biology/seqan-2.4.0-r1
index fcb336418a90..239a906e3c4e 100644
--- a/metadata/md5-cache/sci-biology/seqan-2.4.0-r1
+++ b/metadata/md5-cache/sci-biology/seqan-2.4.0-r1
@@ -1,4 +1,4 @@
-BDEPEND=dev-util/ninja dev-util/cmake
+BDEPEND=dev-util/ninja >=dev-util/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare setup test
DEPEND=app-arch/bzip2:= sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2
DESCRIPTION=C++ Sequence Analysis Library
@@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2:= sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seq
REQUIRED_USE=cpu_flags_x86_sse4_1
SLOT=0
SRC_URI=https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz
-_eclasses_=toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 97566c1a256d07b00848aa767e38a352 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic 4134b5c0fb719b9161d10bdaba9e09e5 xdg-utils 27f9a2f19502b925ac117bd657aa2979 cmake 518e4c9a6a38dfd7afc54b6a7c5de3da multibuild 05a584848db4901c97fcd94ae7cc3a97
+_eclasses_=toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 97566c1a256d07b00848aa767e38a352 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic 4134b5c0fb719b9161d10bdaba9e09e5 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 xdg-utils 27f9a2f19502b925ac117bd657aa2979 cmake 11fee991ab428a3370e5c20fa8231fb6 multibuild 05a584848db4901c97fcd94ae7cc3a97
_md5_=8796fa7c1594d16d8a9b96920de5cf2b
diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40 b/metadata/md5-cache/sci-biology/uchime-4.2.40
index 75c2f008bb0c..c547cba79d16 100644
--- a/metadata/md5-cache/sci-biology/uchime-4.2.40
+++ b/metadata/md5-cache/sci-biology/uchime-4.2.40
@@ -1,4 +1,4 @@
-BDEPEND=dev-util/ninja dev-util/cmake
+BDEPEND=dev-util/ninja >=dev-util/cmake-3.20.5
DEFINED_PHASES=compile configure install prepare test
DESCRIPTION=Fast, accurate chimera detection
EAPI=7
@@ -8,5 +8,5 @@ KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux
LICENSE=public-domain
SLOT=0
SRC_URI=https://www.drive5.com/uchime/uchime4.2.40_src.tar.gz
-_eclasses_=toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 97566c1a256d07b00848aa767e38a352 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic 4134b5c0fb719b9161d10bdaba9e09e5 xdg-utils 27f9a2f19502b925ac117bd657aa2979 cmake 518e4c9a6a38dfd7afc54b6a7c5de3da
+_eclasses_=toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa multilib 97566c1a256d07b00848aa767e38a352 edos2unix 33e347e171066657f91f8b0c72ec8773 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 wrapper 4251d4c84c25f59094fd557e0063a974 eutils dab5d8ec471d025b79c9e6906bcf3bff flag-o-matic 4134b5c0fb719b9161d10bdaba9e09e5 multiprocessing 61c959fc55c15c00bbb1079d6a71370b ninja-utils a4dab848a4490e8e48cf0baab3e61bc2 xdg-utils 27f9a2f19502b925ac117bd657aa2979 cmake 11fee991ab428a3370e5c20fa8231fb6
_md5_=421c75fd545cd9d38575321e00aeab36