2017-02-25 16:03:05 UTC

5 files changed, 29 insertions, 18 deletions

diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r1 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r1
deleted file mode 100644
index 75409d365191..000000000000
--- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r1
+++ /dev/null
@@ -1,15 +0,0 @@
-DEFINED_PHASES=compile configure install prepare test
-DEPEND=dev-libs/glib:2 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
-DESCRIPTION=Generic tool for pairwise sequence comparison
-EAPI=4
-HOMEPAGE=http://www.ebi.ac.uk/~guy/exonerate/
-IUSE=utils test threads
-KEYWORDS=~amd64 ~x86 ~ppc-macos ~x64-macos
-LICENSE=GPL-3
-RDEPEND=dev-libs/glib:2
-REQUIRED_USE=test? ( utils )
-SLOT=0
-SRC_URI=http://www.ebi.ac.uk/~guy/exonerate/exonerate-2.2.0.tar.gz
-_eclass_exported_funcs=src_prepare:- src_configure:- src_compile:autotools-utils src_test:autotools-utils src_install:-
-_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	autotools-utils	419811142edf3516b0d0cf1a254d93cb	eutils	708f85bc1bf00876604e223fb56e062a	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
-_md5_=178b12fcf2b0c150e6145c1d28525a7b
diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
new file mode 100644
index 000000000000..e7d84ba37317
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
@@ -0,0 +1,15 @@
+DEFINED_PHASES=configure install prepare
+DEPEND=dev-libs/glib:2 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DESCRIPTION=Generic tool for pairwise sequence comparison
+EAPI=6
+HOMEPAGE=https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate
+IUSE=test threads utils
+KEYWORDS=~amd64 ~x86 ~ppc-macos ~x64-macos
+LICENSE=GPL-3
+RDEPEND=dev-libs/glib:2
+REQUIRED_USE=test? ( utils )
+SLOT=0
+SRC_URI=http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz
+_eclass_exported_funcs=src_prepare:- src_configure:- src_install:-
+_eclasses_=autotools	07e71b3b5690738ef7e8bc097077e00c	libtool	84763589a795fb127b537cac01e5359f	multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_md5_=cdf8e44122e18a8298a55be023ae333c
diff --git a/metadata/md5-cache/sci-biology/kalign-2.03-r2 b/metadata/md5-cache/sci-biology/kalign-2.03-r2
new file mode 100644
index 000000000000..d7eae2e209e6
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/kalign-2.03-r2
@@ -0,0 +1,11 @@
+DEFINED_PHASES=compile install prepare
+DESCRIPTION=Global and progressive multiple sequence alignment
+EAPI=6
+HOMEPAGE=http://msa.cgb.ki.se/
+KEYWORDS=~amd64 ~x86
+LICENSE=GPL-2
+SLOT=0
+SRC_URI=mirror://debian/pool/main/k/kalign/kalign_2.03.orig.tar.gz
+_eclass_exported_funcs=src_prepare:- src_compile:- src_install:-
+_eclasses_=multilib	165fc17c38d1b11dac2008280dab6e80	toolchain-funcs	1b1da0c45c555989dc5d832b54880783
+_md5_=35e6048c020c17f19a1b80bf9ac67da3
diff --git a/metadata/pkg_desc_index b/metadata/pkg_desc_index
index 8a53e0fa8143..5e9111b99b2f 100644
--- a/metadata/pkg_desc_index
+++ b/metadata/pkg_desc_index
@@ -15803,7 +15803,7 @@ sci-biology/embassy-topo 2.0.660: EMBOSS integrated version of Transmembrane pro
 sci-biology/embassy-vienna 1.7.2.660: EMBOSS integrated version of Vienna RNA package - RNA folding
 sci-biology/emboss 6.6.0-r1: The European Molecular Biology Open Software Suite - A sequence analysis package
 sci-biology/eugene 4.1 4.1d: Prokaryotic and Eukaryotic gene predictor
-sci-biology/exonerate 2.2.0-r1: Generic tool for pairwise sequence comparison
+sci-biology/exonerate 2.2.0-r2: Generic tool for pairwise sequence comparison
 sci-biology/express 0.9.5-r1 1.5.1: Streaming RNA-Seq Analysis
 sci-biology/fasta 35.4.10 36.3.5e: FASTA is a DNA and Protein sequence alignment software package
 sci-biology/fasttree 2.1.7 2.1.8: Fast inference of approximately-maximum-likelihood phylogenetic trees
@@ -15820,7 +15820,7 @@ sci-biology/hmmer 2.3.2-r3 2.3.2-r4 3.1_beta2: Sequence analysis using profile h
 sci-biology/iedera 1.04 1.05-r1: A subset seed design tool for DNA sequence alignment
 sci-biology/infernal 1.0.2-r1: Inference of RNA alignments
 sci-biology/iqpnni 3.3.1 3.3.2-r1: Important Quartet Puzzling and NNI Operation
-sci-biology/kalign 2.03 2.03-r1: Global and progressive multiple sequence alignment
+sci-biology/kalign 2.03 2.03-r1 2.03-r2: Global and progressive multiple sequence alignment
 sci-biology/lagan 2.0-r3: The LAGAN suite of tools for whole-genome multiple alignment of genomic DNA
 sci-biology/last 230 299: Genome-scale comparison of biological sequences
 sci-biology/mafft 7.050 7.215 7.305: Multiple sequence alignments using a variety of algorithms
diff --git a/metadata/timestamp.chk b/metadata/timestamp.chk
index 9efc0a5a54cd..78775d3fe61e 100644
--- a/metadata/timestamp.chk
+++ b/metadata/timestamp.chk
@@ -1 +1 @@
-Sat, 25 Feb 2017 15:43:10 +0000
+Sat, 25 Feb 2017 16:03:06 +0000