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* sci-libs/netcdf-cxx: port 4.2-r300 to EAPI 7, drop autotools-utils.eclassSam James2021-03-281-5/+10
| | | | | | | | | | | * Port to EAPI 7 * Drop autotools-utils.eclass * Drop unused versionator.eclass Revbumping to ensure visibility of any reported issues, but should not be technically necessary. Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/plplot: Drop 5.15.0-r100Andreas Sturmlechner2021-03-281-298/+0
| | | | | Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/plplot: Drop superfluous dev-ml/cairo-ocaml[gtk] DEPENDAndreas Sturmlechner2021-03-281-0/+297
| | | | | | | | | | ebuild run with USE="ocaml cairo" says: -- WARNING: PLplot OCaml Cairo support currently requires substantial development effort so is indefinitely disabled Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/votca-tools: Stabilize 1.6.4 amd64, #773175Sam James2021-03-271-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hypre: adjust CC check for consistencySam James2021-03-271-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hypre: add 2.20.0Sam James2021-03-272-0/+112
| | | | | Closes: https://bugs.gentoo.org/681580 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hypre: drop useless cmake.eclass inherit in 2.18.2Sam James2021-03-271-10/+11
| | | | | Closes: https://bugs.gentoo.org/681580 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hypre: fix github remote-idSam James2021-03-271-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gerris: port to EAPI 7, respect NMSam James2021-03-272-7/+23
| | | | | | | | | * Port to EAPI 7 * ${EPREFIX} -> ${ESYSROOT} for header location * Respect NM Closes: https://bugs.gentoo.org/725450 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gerris: fix build with slibtoolSam James2021-03-272-1/+121
| | | | | | Thanks-to: orbea <orbea@riseup.net> Closes: https://bugs.gentoo.org/778341 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/udunits: Fix broken symlinkJakov Smolic2021-03-261-1/+2
| | | | | | Closes: https://bugs.gentoo.org/770490 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/cmpfit: Bump to 1.4Jakov Smolic2021-03-262-0/+33
| | | | | Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/alglib: Bump to 3.17.0Jakov Smolic2021-03-262-0/+31
| | | | | | | Closes: https://bugs.gentoo.org/774438 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/libqalculate: Bump to 3.17.0Jakov Smolic2021-03-262-0/+66
| | | | | Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/vtk: 8.2.0: update deprecated var for setting Python site-dirAlexei Colin2021-03-252-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Problem: On some platforms (ppc64le), Python modules are installed into $EPREFIX/usr/lib64/pythonX.Y/site-packages instead of $EPREFIX/usr/lib/pythonX.Y/site-packages Reason: The ebuild sets VTK_INSTALL_PYTHON_MODULE_DIR, but it has been deprecated and thus has no effect. Thus, the install directory used is the default install directory, and for some reason it's /usr/lib64 instead of /usr/lib. The only reference to the deprecated var in v8.2.0 is to print the deprecation warning: ./CMake/vtkDirectories.cmake:29:if(DEFINED VTK_INSTALL_PYTHON_MODULE_DIR) ./CMake/vtkDirectories.cmake-30- message(WARNING ./CMake/vtkDirectories.cmake:31: "VTK_INSTALL_PYTHON_MODULE_DIR is no longer supported. " ./CMake/vtkDirectories.cmake-32- "Set `VTK_PYTHON_SITE_PACKAGES_SUFFIX` instead, although not needed in most cases.") ./CMake/vtkDirectories.cmake-33-endif() Note that in versions >8.2.0, this warning has been removed, too. The fix: VTK_INSTALL_PYTHON_MODULES_DIR is still honored, including in >8.2.0, so use it instead. Note that VTK_PYTHON_SITE_PACKAGES_SUFFIX does not help because it is appended after the lib directory in the path. Perhaps a deeper fix might be to figure out why the default lib dir is set to lib64 instead of lib. I didn't investigate this further. The ebuild already intends to override the default, and this commit just fixes that override. I don't know if the default dir is still broken in >8.2.0, i.e. whether it is still necessary for the >8.2.0 ebuilds to override the default installation directory. There have been related changes, though, see at least this commit that's not in 8.2.0 but is in master: commit 4c42ff417c209087bf0058a9eb2614928943156b Author: Ben Boeckel <ben.boeckel@kitware.com> Date: Thu Oct 18 13:17:11 2018 -0400 vtkPython: expose VTK_PYTHONPATH to consumers of VTK Signed-off-by: Alexei Colin <ac@alexeicolin.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/hdf5: fix build with slibtoolSam James2021-03-201-1/+4
| | | | | | | | | It's not completely clear how slibtool should've known to append -fPIC, but let's not worry too much for now. Closes: https://bugs.gentoo.org/775305 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/votca-tools: live ebuild updatesChristoph Junghans2021-03-191-1/+3
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Christoph Junghans <junghans@gentoo.org>
* sci-libs/openblas: add 0.3.14Sam James2021-03-172-0/+199
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/m4rie: new revision with patch for libm linking.Michael Orlitzky2021-03-162-1/+38
| | | | | | | | | | Thanks to Alessandro Barbieri, François Bissey, and Martin Albrecht (upstream) for getting this fixed quickly. This commit adds an -r1 with the backported patch and a call to eautoreconf. Closes: https://bugs.gentoo.org/775311 Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* */*: Add proxied="yes" for non-@gentoo.org peopleMichał Górny2021-03-1629-29/+29
| | | | | | | | | | | | Done via: find -name metadata.xml -exec xml ed -P -L \ -a '/pkgmetadata/maintainer[substring(email, string-length(email) - string-length("@gentoo.org") + 1) != "@gentoo.org"]' \ -t attr -n proxied -v yes {} + Signed-off-by: Michał Górny <mgorny@gentoo.org>
* */*: Add 'proxied="proxy"' for proxy-maint projectMichał Górny2021-03-1616-16/+16
| | | | | | | | | | Done via: find -name metadata.xml -exec xml ed -P -L \ -a '//maintainer[email="proxy-maint@gentoo.org"]' \ -t attr -n proxied -v proxy {} + Signed-off-by: Michał Górny <mgorny@gentoo.org>
* */*: Normalize metadata.xml filesMichał Górny2021-03-1613-13/+12
| | | | | | | | | | | Normalize quoting, replace '>' with entities, replace unnecessary entities, remove trailing empty lines. Done via: find -name metadata.xml -exec xml ed -P -L -d //none {} + Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/lapack: add github remote-idSam James2021-03-151-0/+3
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/votca-tools: disable mkl (bug #776319)Christoph Junghans2021-03-151-0/+1
| | | | | | Closes: https://bugs.gentoo.org/776319 Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Christoph Junghans <junghans@gentoo.org>
* sci-libs/libint: fix install of static libs (bug #776256)Christoph Junghans2021-03-141-1/+4
| | | | | | Closes: https://bugs.gentoo.org/776256 Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Christoph Junghans <junghans@gentoo.org>
* sci-libs/libint: enable shared libsChristoph Junghans2021-03-142-0/+64
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Christoph Junghans <junghans@gentoo.org>
* sci-libs/votca-tools: version bumpChristoph Junghans2021-03-143-3/+45
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Christoph Junghans <junghans@gentoo.org>
* sci-libs/mc: Port to EAPI 7David Seifert2021-03-131-39/+37
| | | | | Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* Reverts: efc78ff95f89db0e7c2400c72a4d819976c3df0dDavid Seifert2021-03-132-0/+27
| | | | | | * Still needed by sci-libs/vtk Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/punc: Port to EAPI 7David Seifert2021-03-131-38/+33
| | | | | Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/gamer: Port to EAPI 7David Seifert2021-03-131-29/+30
| | | | | Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/gts: port to EAPI 7, fix docsIonen Wolkens2021-03-133-80/+69
| | | | | | | | | | | | | * Updated autotools patch: - p0 -> p1 and metadata removal - removed bits that were meant to support out-of-source (unused) * Removed USE=examples (small files, now installed by default) Closes: https://github.com/gentoo/gentoo/pull/19693 Closes: https://bugs.gentoo.org/727536 Package-Manager: Portage-3.0.15, Repoman-3.0.2 Signed-off-by: Ionen Wolkens <sudinave@gmail.com> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/netcdf-cxx: Remove old 4.2-r300David Seifert2021-03-132-27/+0
| | | | | Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/symengine: add 0.7.0Sam James2021-03-133-0/+112
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/armadillo: Version bump 10.3.0Andreas K. Hüttel2021-03-132-0/+149
| | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/levmar: drop oldDennis Lamm2021-03-121-48/+0
| | | | | | | Signed-off-by: Dennis Lamm <expeditioneer@gentoo.org> Package-Manager: Portage-3.0.13, Repoman-3.0.2 Closes: https://github.com/gentoo/gentoo/pull/19887 Signed-off-by: Dennis Lamm <expeditioneer@gentoo.org>
* sci-libs/levmar: EAPI-7 bumpDennis Lamm2021-03-122-1/+50
| | | | | | | Closes: https://bugs.gentoo.org/770598 Signed-off-by: Dennis Lamm <expeditioneer@gentoo.org> Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Dennis Lamm <expeditioneer@gentoo.org>
* sci-libs/gdal: actually fix autoconf 2.70+Sam James2021-03-111-1/+1
| | | | | | | | Was confused by having not depcleaned, so didn't test previous fix with autoconf 2.70. Closes: https://bugs.gentoo.org/775209 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: fix autoconf 2.70+Sam James2021-03-111-0/+4
| | | | | Closes: https://bugs.gentoo.org/775209 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: add 3.2.2, add CPU_FLAGS_X86_*Sam James2021-03-112-0/+313
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: update libdir patch (again)Sam James2021-03-091-1/+1
| | | | | | Missed one 'lib'. Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: update older patch metadataSam James2021-03-092-5/+5
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: add bug reference to commentSam James2021-03-091-0/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: adjust pathsSam James2021-03-091-10/+10
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: remove some patch metadataSam James2021-03-091-26/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: update libdir patch slightlySam James2021-03-091-71/+95
| | | | | | | | * Removed more obsolete libproj logic/checks * Fix json-c too Bug: https://bugs.gentoo.org/696106 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: add link to upstream PRSam James2021-03-091-0/+2
| | | | | Bug: https://bugs.gentoo.org/696106 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: respect libdirSam James2021-03-092-2/+416
| | | | | | | | | | | | | | | To be upstreamed. Unfortunately, we can't do *everything* required in Gentoo in the patch, as there's a --with-local argument which I'd prefer to get rid of, but is a bit too invasive of a change for me to want to push upstream for now. So, we settle on a single sed in the ebuild, which is an improvement! Closes: https://bugs.gentoo.org/696106 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/geos: Stabilize 3.9.0-r2 arm, #770094Sam James2021-03-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/indilib: stabilize 1.8.8 on ppcJoonas Niilola2021-03-071-1/+1
| | | | | | Bug: https://bugs.gentoo.org/753953 Bug: https://bugs.gentoo.org/753137 Signed-off-by: Joonas Niilola <juippis@gentoo.org>