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* sci-libs/tensorflow-estimator: bump 2.8.0Jason Zaman2022-02-062-0/+78
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/tensorflow: Bump 2.8.0Jason Zaman2022-02-062-0/+431
| | | | | | | Also unbundle abseil-cpp and move to std=c++17 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/keras: bump 2.8.0Jason Zaman2022-02-062-0/+88
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/indilib: fix musl buildSam James2022-02-062-0/+112
| | | | | Closes: https://bugs.gentoo.org/829487 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: Cleanup vulnerable 3.3.3 and 3.4.0Andreas Sturmlechner2022-02-053-642/+0
| | | | | | Bug: https://bugs.gentoo.org/830370 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/branca: PythonCompatUpdateAlfredo Tupone2022-02-041-2/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/parmetis: Stabilize 4.0.3-r2 amd64, #816579Sam James2022-02-021-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/tensorflow: Fix Python dependenciesMichał Górny2022-02-012-18/+11
| | | | | | | DISTUTILS_USE_SETUPTOOLS is not used with DISTUTILS_OPTIONAL, the dep on setuptools needs to be declared explicitly. Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/proj: remove unused patch(es)Michael Mair-Keimberger2022-01-311-29/+0
| | | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Closes: https://github.com/gentoo/gentoo/pull/23816 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/scotch: remove unused patch(es)Michael Mair-Keimberger2022-01-312-161/+0
| | | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Closes: https://github.com/gentoo/gentoo/pull/23815 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/hipBLAS: ROCm BLAS marshalling libraryYiyangWu2022-01-303-0/+58
| | | | | | | | | | hipBLAS is a front end of rocBLAS, which is the dependency of some ROCm GPGPU package like cupy. Closes: https://github.com/gentoo/gentoo/pull/23771 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/pastix: fix building against OpenMPI 4.1+David Seifert2022-01-292-2/+142
| | | | | Closes: https://bugs.gentoo.org/692742 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/gdal: ppc64 stable wrt bug #830589Agostino Sarubbo2022-01-281-1/+1
| | | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/gdal: ppc stable wrt bug #830589Agostino Sarubbo2022-01-281-1/+1
| | | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/vtk: fix build with USE=offscreenBernd Waibel2022-01-281-2/+3
| | | | | | | | | | | The package can be built with either USE=offscreen, or with USE=X enabled, but not with both simultaneously. Closes: https://bugs.gentoo.org/830774 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/23970 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rocSOLVER: Next generation LAPACK implementation for ROCmYiyangWu2022-01-265-0/+128
| | | | | | | | | | | It is the lapack package of ROCm GPGPU frame work, dependency of hipBLAS and many other GPU accelerated frameworks (e.g. tensorflow) Closes: https://github.com/gentoo/gentoo/pull/23789 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/stellarsolver: 1.9 version bumpAndreas Sturmlechner2022-01-262-0/+28
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* **/metadata.xml: Replace http by https in DOCTYPE elementUlrich Müller2022-01-252-2/+2
| | | | | | Again. :( Signed-off-by: Ulrich Müller <ulm@gentoo.org>
* sci-libs/rocThrust: strip PN from the include path.Benda Xu2022-01-241-0/+76
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/silo: fix build with minimal QTIonen Wolkens2022-01-192-0/+12
| | | | | Closes: https://bugs.gentoo.org/831361 Signed-off-by: Ionen Wolkens <ionen@gentoo.org>
* sci-libs/gdal: remove unused patchesMichael Mair-Keimberger2022-01-193-627/+0
| | | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Closes: https://github.com/gentoo/gentoo/pull/23521 Signed-off-by: Florian Schmaus <flow@gentoo.org>
* sci-libs/indilib: 1.9.4 version bumpAndreas Sturmlechner2022-01-182-0/+70
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/silo: drop unused patchMarco Scardovi2022-01-171-35/+0
| | | | | | | | | | The autoconf patch is required only by debian so we are gonna drop it. Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Marco Scardovi <marco@scardovi.com> Closes: https://github.com/gentoo/gentoo/pull/23742 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/silo: drop old versionMarco Scardovi2022-01-171-47/+0
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Marco Scardovi <marco@scardovi.com> Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/silo: revbump to -r1 and add test againMarco Scardovi2022-01-171-0/+53
| | | | | | | | | | | | See https://github.com/LLNL/Silo/issues/236 for test Closes: https://bugs.gentoo.org/656432 Closes: https://bugs.gentoo.org/718702 Closes: https://bugs.gentoo.org/741741 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Marco Scardovi <marco@scardovi.com> Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/opencascade: revbump for fixed USE_OPENGL option in 7.6.xSam James2022-01-161-0/+0
| | | | | Closes: https://bugs.gentoo.org/831069 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/opencascade: rename from gles2->gles2-only for <7.6.0Sam James2022-01-162-2/+2
| | | | | | Bug: https://github.com/gentoo/gentoo/pull/23814 Closes: https://bugs.gentoo.org/831280 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/opencascade: rename gles2 USE flag to gles2-onlyBernd Waibel2022-01-152-2/+2
| | | | | | | | | Bugs: https://bugs.gentoo.org/831069 Bugs: https://bugs.gentoo.org/831126 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/23814 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/opencascade: don't pass USE_OPENGL optionBernd Waibel2022-01-151-1/+0
| | | | | | | | | | | | The option defaults to on and was erroneously passed as with the invert value of the gles2 USE flag, which lead to only libTKOpenGles library being built, but no libTKOpenGL library, resulting in build failures in revdeps. Closes: https://bugs.gentoo.rog/831069 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/opencascade: fix installation paths for 7.5Bernd Waibel2022-01-152-14/+24
| | | | | | | | | | | | Use the same path as for the 7.6 series /usr/$(get_libdir)/${PN} instead of /usr/$(get_libdir)/${P}, so the changed environment files works for all versions. Bugs: https://bugs.gentoo.org/831054 Bugs: https://bugs.gentoo.org/831069 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/dealii: ebuild maintenance, update opencascade depMatthias Maier2022-01-152-21/+12
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/cantera: add Python3.10, update to sci-libs/sundials-5.8Sergey Torokhov2022-01-151-0/+144
| | | | | | Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Closes: https://github.com/gentoo/gentoo/pull/23413 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/dealii: update opencascade dependencyMatthias Maier2022-01-142-2/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/numkit: Add py 3.10Alexey Shvetsov2022-01-131-2/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/scotch: drop 6.0.4-r2 (EAPI 5 --)Jakov Smolić2022-01-132-177/+0
| | | | | Bug: https://bugs.gentoo.org/818649 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/gdal: Stabilize 3.4.1 arm64, #830589Sam James2022-01-131-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf-fortran: fix UnusedInheritsSam James2022-01-131-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf-fortran: add 4.5.4Sam James2022-01-132-0/+44
| | | | | | | | | Drops Fortran flag workaround: https://github.com/Unidata/netcdf-fortran/commit/846ec7ac1d1eb552d319ce51fd70b832f6fcb347 Bug: https://github.com/Unidata/netcdf-fortran/pull/316 Bug: https://bugs.gentoo.org/723274 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/opencascade: block eselect-opencascadeSam James2022-01-133-0/+3
| | | | | | | | | | | We're no longer pursuing slotted OCC. Please emerge --depclean it if you have it installed (eselect-opencascade). Deslotting of OCC was already completed. Bug: https://bugs.gentoo.org/831069 Bug: https://bugs.gentoo.org/831054 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/opencascade: fix installed environment file for non-slottedSam James2022-01-134-25/+22
| | | | | | | | | | | | | | | | | | We're no longer using slotted OCC but I don't think we fully completed the version. I was initially going to wait but upon reflection, I think this is the only way forward that makes sense (updating the env.in to reflect the earlier changes). The old/outdated env file results in build failures in e.g. kicad. (Also, change ESYSROOT -> EPREFIX for the env file as the env file is for the end result system.) Bug: https://bugs.gentoo.org/831069 Bug: https://bugs.gentoo.org/831054 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/inchi: Port to EAPI 8Jakov Smolić2022-01-123-54/+14
| | | | | Closes: https://bugs.gentoo.org/828699 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/netcdf: Stabilize 4.8.1-r1 amd64, #830880Jakov Smolić2022-01-111-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/netcdf: Stabilize 4.8.1-r1 x86, #830880Jakov Smolić2022-01-111-2/+2
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/getdata: add version 0.11.0, EAPI bumpAndrew Ammerlaan2022-01-112-0/+60
| | | | | | Closes: https://bugs.gentoo.org/811978 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/ipopt: add version 3.14.4Andrew Ammerlaan2022-01-113-11/+92
| | | | | | | Closes: https://bugs.gentoo.org/804130 Bug: https://bugs.gentoo.org/710382 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/gdal: fix build with Poppler 22.01.0 (build with C++ 17)Sam James2022-01-102-0/+24
| | | | | Closes: https://bugs.gentoo.org/830883 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gsl: stable 2.7.1-r1 for sparc, bug #830769Rolf Eike Beer2022-01-101-1/+1
| | | | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 RepoMan-Options: --include-arches="sparc" Signed-off-by: Rolf Eike Beer <eike@sf-mail.de> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libqalculate: Stabilize 3.22.0 arm64, #830765Arthur Zamarin2022-01-101-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/gdal: x86 stable wrt bug #830589Agostino Sarubbo2022-01-101-1/+1
| | | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/gdal: amd64 stable wrt bug #830589Agostino Sarubbo2022-01-101-1/+1
| | | | | | Package-Manager: Portage-3.0.28, Repoman-3.0.3 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>