diff options
Diffstat (limited to 'sci-biology/mosaik/files/mosaik-2.2.30-gcc7.patch')
| -rw-r--r-- | sci-biology/mosaik/files/mosaik-2.2.30-gcc7.patch | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/sci-biology/mosaik/files/mosaik-2.2.30-gcc7.patch b/sci-biology/mosaik/files/mosaik-2.2.30-gcc7.patch new file mode 100644 index 000000000000..ebf925a0cbb7 --- /dev/null +++ b/sci-biology/mosaik/files/mosaik-2.2.30-gcc7.patch @@ -0,0 +1,40 @@ +--- a/CommonSource/ExternalReadFormats/BamWriter.cpp ++++ b/CommonSource/ExternalReadFormats/BamWriter.cpp +@@ -496,7 +496,7 @@ + buffer[6] = 0xffffffff; // mate_pos + buffer[7] = 0; // ins_size + +- const char* startChar = '\0'; ++ const char* startChar = NULL; + + // write the block size + const unsigned int dataBlockSize = nameLen + packedCigarLen + encodedQueryLen + queryLen; +@@ -652,7 +652,7 @@ + unsigned int zaTagLen = 0; + string zaTag; + char* pZaTag; +- if ((zaString != 0) && (zaString != (char)0)) { ++ if ((zaString != 0) && (zaString[0] != '\0')) { + zaTagLen = 3 + strlen( zaString ) + 1; + zaTag.resize( zaTagLen ); + pZaTag = (char*)zaTag.data(); +@@ -776,7 +776,7 @@ + BgzfWrite(mdTag.data(), mdTagLen); + + // write the ZA tag +- if ( zaString != 0 && (zaString != (char)0)) ++ if ( zaString != 0 && (zaString[0] != '\0')) + BgzfWrite(zaTag.data(), zaTagLen); + + // write the ZN tag +--- a/MosaikAligner/AlignmentThread.cpp ++++ b/MosaikAligner/AlignmentThread.cpp +@@ -591,7 +591,7 @@ + buffer.al = al; + buffer.noCigarMdNm = noCigarMdNm; + buffer.notShowRnamePos = notShowRnamePos; +- if ( zaString == (char)0 ) ++ if ( zaString == NULL ) + buffer.zaString.clear(); + else + buffer.zaString = zaString; |