From 148284771ddba8f8d578862a36cf62b24faa301f Mon Sep 17 00:00:00 2001 From: Andrey Kislyuk Date: Sun, 17 Oct 2010 22:18:33 +0000 Subject: Update live ebuild for upstream svm->github migration, bug 338362. Thanks to Joel Berendzen (Portage version: 2.2_rc86/cvs/Linux x86_64) --- sci-biology/bioperl-run/ChangeLog | 11 ++++-- sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild | 41 ++++++++++++++++++++++ sci-biology/bioperl-run/bioperl-run-9999.ebuild | 41 ---------------------- 3 files changed, 50 insertions(+), 43 deletions(-) create mode 100644 sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild delete mode 100644 sci-biology/bioperl-run/bioperl-run-9999.ebuild (limited to 'sci-biology/bioperl-run') diff --git a/sci-biology/bioperl-run/ChangeLog b/sci-biology/bioperl-run/ChangeLog index 7c4702891a0f..0b7ebd7c5de7 100644 --- a/sci-biology/bioperl-run/ChangeLog +++ b/sci-biology/bioperl-run/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-biology/bioperl-run -# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.19 2009/06/11 19:33:30 maekke Exp $ +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.20 2010/10/17 22:18:33 weaver Exp $ + +*bioperl-run-9999-r1 (17 Oct 2010) + + 17 Oct 2010; Andrey Kislyuk -bioperl-run-9999.ebuild, + +bioperl-run-9999-r1.ebuild: + Update live ebuild for upstream svm->github migration, bug 338362. Thanks + to Joel Berendzen 11 Jun 2009; Markus Meier bioperl-run-1.6.1.ebuild: amd64 stable, bug #270582 diff --git a/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild b/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild new file mode 100644 index 000000000000..2a306df4804b --- /dev/null +++ b/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999-r1.ebuild,v 1.1 2010/10/17 22:18:33 weaver Exp $ + +EAPI="2" + +inherit perl-module git + +DESCRIPTION="Perl tools for bioinformatics - Wrapper modules around key bioinformatics applications" +HOMEPAGE="http://www.bioperl.org/" +SRC_URI="" +EGIT_REPO_URI="git://github.com/bioperl/${PN}.git" + +LICENSE="Artistic GPL-2" +SLOT="0" +KEYWORDS="" +IUSE="-minimal test" +#SRC_TEST="do" + +RESTRICT="test" + +CDEPEND=">=sci-biology/bioperl-${PV} + !minimal? ( + dev-perl/Algorithm-Diff + dev-perl/XML-Twig + dev-perl/IO-String + dev-perl/IPC-Run + )" +DEPEND="virtual/perl-Module-Build + ${CDEPEND}" +RDEPEND="${CDEPEND}" + +S="${WORKDIR}/BioPerl-run-${PV}" + +src_install() { + mydoc="AUTHORS BUGS FAQ" + perl-module_src_install + # TODO: File collision in Bio/ConfigData.pm (a Module::Build internal file) + # with sci-biology/bioperl. Workaround: the "nuke it from orbit" solution :D + find "${D}" -name '*ConfigData*' -print -delete +} diff --git a/sci-biology/bioperl-run/bioperl-run-9999.ebuild b/sci-biology/bioperl-run/bioperl-run-9999.ebuild deleted file mode 100644 index a2b3571f1195..000000000000 --- a/sci-biology/bioperl-run/bioperl-run-9999.ebuild +++ /dev/null @@ -1,41 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-9999.ebuild,v 1.4 2009/06/01 16:22:04 weaver Exp $ - -EAPI="2" - -inherit perl-module subversion - -DESCRIPTION="Perl tools for bioinformatics - Wrapper modules around key bioinformatics applications" -HOMEPAGE="http://www.bioperl.org/" -SRC_URI="" -ESVN_REPO_URI="svn://code.open-bio.org/bioperl/${PN}/trunk" - -LICENSE="Artistic GPL-2" -SLOT="0" -KEYWORDS="" -IUSE="-minimal test" -#SRC_TEST="do" - -RESTRICT="test" - -CDEPEND=">=sci-biology/bioperl-${PV} - !minimal? ( - dev-perl/Algorithm-Diff - dev-perl/XML-Twig - dev-perl/IO-String - dev-perl/IPC-Run - )" -DEPEND="virtual/perl-Module-Build - ${CDEPEND}" -RDEPEND="${CDEPEND}" - -S="${WORKDIR}/BioPerl-run-${PV}" - -src_install() { - mydoc="AUTHORS BUGS FAQ" - perl-module_src_install - # TODO: File collision in Bio/ConfigData.pm (a Module::Build internal file) - # with sci-biology/bioperl. Workaround: the "nuke it from orbit" solution :D - find "${D}" -name '*ConfigData*' -print -delete -} -- cgit v1.2.3-65-gdbad