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-rw-r--r--sci-chemistry/vmd/ChangeLog6
-rw-r--r--sci-chemistry/vmd/vmd-1.8.6-r1.ebuild162
-rw-r--r--sci-chemistry/vmd/vmd-1.8.6.ebuild160
-rw-r--r--sci-chemistry/vmd/vmd-1.8.7.ebuild167
4 files changed, 5 insertions, 490 deletions
diff --git a/sci-chemistry/vmd/ChangeLog b/sci-chemistry/vmd/ChangeLog
index ad9cdc020285..ac6fce09aae6 100644
--- a/sci-chemistry/vmd/ChangeLog
+++ b/sci-chemistry/vmd/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-chemistry/vmd
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/ChangeLog,v 1.28 2010/05/18 07:22:51 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/ChangeLog,v 1.29 2010/05/28 18:21:25 jlec Exp $
+
+ 28 May 2010; Justin Lecher <jlec@gentoo.org> -vmd-1.8.6.ebuild,
+ -vmd-1.8.6-r1.ebuild, -vmd-1.8.7.ebuild:
+ Removed all non PythonABI compatible ebuilds
*vmd-1.8.7-r1 (18 May 2010)
diff --git a/sci-chemistry/vmd/vmd-1.8.6-r1.ebuild b/sci-chemistry/vmd/vmd-1.8.6-r1.ebuild
deleted file mode 100644
index 0f5794271b77..000000000000
--- a/sci-chemistry/vmd/vmd-1.8.6-r1.ebuild
+++ /dev/null
@@ -1,162 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.8.6-r1.ebuild,v 1.3 2010/02/23 18:00:14 alexxy Exp $
-
-EAPI="1"
-
-inherit eutils toolchain-funcs python
-
-DESCRIPTION="Visual Molecular Dynamics"
-LICENSE="vmd"
-HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/"
-SRC_URI="${P}.src.tar.gz"
-
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86"
-IUSE="tachyon"
-
-RESTRICT="fetch"
-
-DEPEND="app-shells/tcsh
- x11-libs/libXft
- virtual/opengl
- x11-libs/fltk:1.1
- >=dev-lang/tcl-8.4
- >=dev-lang/tk-8.4
- >=dev-lang/python-2.3
- sci-biology/stride
- sci-libs/netcdf"
-
-RDEPEND="${DEPEND}
- tachyon? ( media-gfx/tachyon )"
-
-VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD"
-
-pkg_nofetch() {
- echo
- elog "Please download ${SRC_URI} from"
- elog "${VMD_DOWNLOAD}"
- elog "after agreeing to the license and then move it to "
- elog "${DISTDIR}"
- echo
-}
-
-src_unpack() {
- unpack ${A}
- cd "${S}"
-
- # apply LINUX-arch patches to vmd configure
- epatch "${FILESDIR}/${P}-config-gentoo.patch"
- epatch "${FILESDIR}/${P}-python-2.5.patch"
-
- TCL_LIB_PATH="/usr/$(get_libdir)/tcl8.4"
- if has_version =dev-lang/tcl-8.5*; then
- epatch "${FILESDIR}/${P}-tcltk8.5.patch"
- epatch "${FILESDIR}/${P}-fix-crash-on-tcl8.5.patch"
- TCL_LIB_PATH="/usr/$(get_libdir)/tcl8.5"
- fi
-
- # prepare the plugins
-
- cd "${WORKDIR}"/plugins
-
- sed -e "s:CC = gcc:CC = $(tc-getCC):" \
- -e "s:CXX = g++:CXX = $(tc-getCXX):" \
- -e "s:COPTO = -o :COPTO = -fPIC -o :" \
- -e "s:LOPTO = -o :LOPTO = -fPIC -o :" \
- -e "s:CCFLAGS = -O2 -Wall:CCFLAGS = ${CFLAGS}:" \
- -e "s:CXXFLAGS = -O2 -Wall:CXXFLAGS = ${CXXFLAGS}:" \
- -e "s:SHLD = gcc:SHLD = $(tc-getCC):" \
- -e "s:-ltcl8.4:-ltcl:" \
- -i Make-arch || die "Failed to set up plugins Makefile"
-
- sed -e "s:1.0:1.2:" -i vdna/pkgIndex.tcl \
- || die "Failed to fix vdna plugin"
-
- # prepare vmd itself
-
- cd "${S}"
-
- sed -e "s:gentoo-bindir:${D}/usr/bin:" \
- -e "s:gentoo-libdir:${D}/usr/$(get_libdir):" \
- -i configure || die "failed to adjust install paths"
-
- sed -e "s:gentoo-gcc:$(tc-getCC):" \
- -e "s:gentoo-g++:$(tc-getCXX):" \
- -e "s:gentoo-cflags:${CFLAGS}:" \
- -i configure || die "Failed to adjust C compiler/flags"
-
- sed -e "s:gentoo-plugindir:${WORKDIR}/plugins:" \
- -i configure || die "Failed to set up linking to plugin files"
-
- sed -e "s:gentoo-fltk-include:/usr/include/fltk-1.1:" \
- -e "s:gentoo-fltk-libs:/usr/$(get_libdir)/fltk-1.1:" \
- -i configure || die "failed setting up fltk"
-
- sed -e "s:gentoo-netcdf-include:/usr/include:" \
- -e "s:gentoo-netcdf-libs:/usr/$(get_libdir):" \
- -i configure || die "failed to set up netcdf"
-
- # get installed python version
- python_version
- local PY="python${PYVER}"
-
- sed -e "s:gentoo-python-include:/usr/include/${PY}:" \
- -e "s:gentoo-python-lib:/usr/$(get_libdir)/${PY}:" \
- -e "s:gentoo-python-link:${PY}:" \
- -i configure || die "failed setting up python"
-
- sed -e "s:LINUXPPC:LINUX:g" \
- -e "s:LINUXALPHA:LINUX:g" \
- -e "s:LINUXAMD64:LINUX:g" \
- -i "${S}"/bin/vmd || die "failed setting up vmd wrapper script"
-
- local myconfig="LINUX OPENGL FLTK TK TCL PTHREADS PYTHON IMD NETCDF"
-
- rm -f configure.options && echo $myconfig >> configure.options
-
- ./configure &> /dev/null || die "failed to configure"
-}
-
-src_compile() {
- # build plugins
- cd "${WORKDIR}"/plugins
-
- make LINUX TCLINC="-I/usr/include" \
- TCLLIB=-L/"${TCL_LIB_PATH}" \
- || die "failed to build plugins"
-
- # build vmd
- cd "${S}"/src
- emake || die "failed to build vmd"
-}
-
-src_install() {
- # install plugins
- cd "${WORKDIR}"/plugins
- PLUGINDIR=${D}/usr/$(get_libdir)/${PN}/plugins make distrib || \
- die "failed to install plugins"
-
- # install vmd
- cd "${S}"/src
- make install || die "failed to install vmd"
-
- # export STRIDE_BIN so VMD knows where to find stride
- echo "STRIDE_BIN=/usr/bin/stride" > "${T}"/99${PN} || \
- die "Failed to create vmd env file"
- doenvd "${T}"/99${PN} || die "Failed to install vmd env file"
-
- # install docs
- cd "${S}"
- dodoc Announcement README doc/ig.pdf doc/ug.pdf
-
- # remove some of the things we don't want and need in
- # /usr/lib
- cd "${D}"/usr/$(get_libdir)/vmd
- rm -fr doc README Announcement LICENSE || \
- die "failed to clean up /usr/lib/vmd directory"
-
- # adjust path in vmd wrapper
- sed -e "s:${D}::" -i "${D}"/usr/bin/${PN} \
- || die "failed to set up vmd wrapper script"
-}
diff --git a/sci-chemistry/vmd/vmd-1.8.6.ebuild b/sci-chemistry/vmd/vmd-1.8.6.ebuild
deleted file mode 100644
index 90680f8822da..000000000000
--- a/sci-chemistry/vmd/vmd-1.8.6.ebuild
+++ /dev/null
@@ -1,160 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.8.6.ebuild,v 1.8 2009/05/17 20:15:13 je_fro Exp $
-
-EAPI="1"
-
-inherit eutils toolchain-funcs python
-
-DESCRIPTION="Visual Molecular Dynamics"
-LICENSE="vmd"
-HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/"
-SRC_URI="${P}.src.tar.gz"
-
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86"
-IUSE=""
-
-RESTRICT="fetch"
-
-DEPEND="app-shells/tcsh
- x11-libs/libXft
- virtual/opengl
- x11-libs/fltk:1.1
- >=dev-lang/tcl-8.4
- >=dev-lang/tk-8.4
- >=dev-lang/python-2.3
- sci-biology/stride
- sci-libs/netcdf"
-
-RDEPEND="${DEPEND}"
-
-VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD"
-
-pkg_nofetch() {
- echo
- einfo "Please download ${SRC_URI} from"
- einfo "${VMD_DOWNLOAD}"
- einfo "after agreeing to the license and then move it to "
- einfo "${DISTDIR}"
- echo
-}
-
-src_unpack() {
- unpack ${A}
- cd "${S}"
-
- # apply LINUX-arch patches to vmd configure
- epatch "${FILESDIR}"/${P}-config-gentoo.patch
- epatch "${FILESDIR}"/${P}-python-2.5.patch
-
- TCL_LIB_PATH="/usr/$(get_libdir)/tcl8.4"
- if has_version =dev-lang/tcl-8.5*; then
- epatch "${FILESDIR}"/${P}-tcltk8.5.patch
- TCL_LIB_PATH="/usr/$(get_libdir)/tcl8.5"
- fi
-
- # prepare the plugins
-
- cd "${WORKDIR}"/plugins
-
- sed -e "s:CC = gcc:CC = $(tc-getCC):" \
- -e "s:CXX = g++:CXX = $(tc-getCXX):" \
- -e "s:COPTO = -o :COPTO = -fPIC -o :" \
- -e "s:LOPTO = -o :LOPTO = -fPIC -o :" \
- -e "s:CCFLAGS = -O2 -Wall:CCFLAGS = ${CFLAGS}:" \
- -e "s:CXXFLAGS = -O2 -Wall:CXXFLAGS = ${CXXFLAGS}:" \
- -e "s:SHLD = gcc:SHLD = $(tc-getCC):" \
- -e "s:-ltcl8.4:-ltcl:" \
- -i Make-arch || die "Failed to set up plugins Makefile"
-
- sed -e "s:1.0:1.2:" -i vdna/pkgIndex.tcl \
- || die "Failed to fix vdna plugin"
-
- # prepare vmd itself
-
- cd "${S}"
-
- sed -e "s:gentoo-bindir:${D}/usr/bin:" \
- -e "s:gentoo-libdir:${D}/usr/$(get_libdir):" \
- -i configure || die "failed to adjust install paths"
-
- sed -e "s:gentoo-gcc:$(tc-getCC):" \
- -e "s:gentoo-g++:$(tc-getCXX):" \
- -e "s:gentoo-cflags:${CFLAGS}:" \
- -i configure || die "Failed to adjust C compiler/flags"
-
- sed -e "s:gentoo-plugindir:${WORKDIR}/plugins:" \
- -i configure || die "Failed to set up linking to plugin files"
-
- sed -e "s:gentoo-fltk-include:/usr/include/fltk-1.1:" \
- -e "s:gentoo-fltk-libs:/usr/$(get_libdir)/fltk-1.1:" \
- -i configure || die "failed setting up fltk"
-
- sed -e "s:gentoo-netcdf-include:/usr/include:" \
- -e "s:gentoo-netcdf-libs:/usr/$(get_libdir):" \
- -i configure || die "failed to set up netcdf"
-
- # get installed python version
- python_version
- local PY="python${PYVER}"
-
- sed -e "s:gentoo-python-include:/usr/include/${PY}:" \
- -e "s:gentoo-python-lib:/usr/$(get_libdir)/${PY}:" \
- -e "s:gentoo-python-link:${PY}:" \
- -i configure || die "failed setting up python"
-
- sed -e "s:LINUXPPC:LINUX:g" \
- -e "s:LINUXALPHA:LINUX:g" \
- -e "s:LINUXAMD64:LINUX:g" \
- -i "${S}"/bin/vmd || die "failed setting up vmd wrapper script"
-
- local myconfig="LINUX OPENGL FLTK TK TCL PTHREADS PYTHON IMD NETCDF"
-
- rm -f configure.options && echo $myconfig >> configure.options
-
- ./configure &> /dev/null || die "failed to configure"
-}
-
-src_compile() {
- # build plugins
- cd "${WORKDIR}"/plugins
-
- make LINUX TCLINC="-I/usr/include" \
- TCLLIB=-L/"${TCL_LIB_PATH}" \
- || die "failed to build plugins"
-
- # build vmd
- cd "${S}"/src
- emake || die "failed to build vmd"
-}
-
-src_install() {
- # install plugins
- cd "${WORKDIR}"/plugins
- PLUGINDIR=${D}/usr/$(get_libdir)/${PN}/plugins make distrib || \
- die "failed to install plugins"
-
- # install vmd
- cd "${S}"/src
- make install || die "failed to install vmd"
-
- # export STRIDE_BIN so VMD knows where to find stride
- echo "STRIDE_BIN=/usr/bin/stride" > "${T}"/99${PN} || \
- die "Failed to create vmd env file"
- doenvd "${T}"/99${PN} || die "Failed to install vmd env file"
-
- # install docs
- cd "${S}"
- dodoc Announcement README doc/ig.pdf doc/ug.pdf
-
- # remove some of the things we don't want and need in
- # /usr/lib
- cd "${D}"/usr/$(get_libdir)/vmd
- rm -fr doc README Announcement LICENSE || \
- die "failed to clean up /usr/lib/vmd directory"
-
- # adjust path in vmd wrapper
- sed -e "s:${D}::" -i "${D}"/usr/bin/${PN} \
- || die "failed to set up vmd wrapper script"
-}
diff --git a/sci-chemistry/vmd/vmd-1.8.7.ebuild b/sci-chemistry/vmd/vmd-1.8.7.ebuild
deleted file mode 100644
index 44af20cbd78a..000000000000
--- a/sci-chemistry/vmd/vmd-1.8.7.ebuild
+++ /dev/null
@@ -1,167 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.8.7.ebuild,v 1.6 2010/02/23 18:00:14 alexxy Exp $
-
-EAPI="2"
-
-inherit eutils toolchain-funcs python
-
-DESCRIPTION="Visual Molecular Dynamics"
-LICENSE="vmd"
-HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/"
-SRC_URI="${P}.src.tar.gz"
-
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86"
-IUSE="tachyon"
-
-RESTRICT="fetch"
-
-# currently, tk-8.5* with USE=truetype breaks some
-# tk apps such as Sequence Viewer or Timeline.
-DEPEND="x11-libs/libXft
- virtual/opengl
- x11-libs/fltk:1.1
- >=dev-lang/tcl-8.4
- || (
- >=dev-lang/tk-8.5[-truetype]
- =dev-lang/tk-8.4*
- )
- =dev-lang/python-2*
- dev-lang/perl
- dev-python/numpy
- sci-biology/stride
- sci-libs/netcdf"
-
-RDEPEND="${DEPEND}
- x11-terms/xterm
- tachyon? ( media-gfx/tachyon )"
-
-VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD"
-
-pkg_nofetch() {
- echo
- elog "Please download ${SRC_URI} from"
- elog "${VMD_DOWNLOAD}"
- elog "after agreeing to the license and then move it to "
- elog "${DISTDIR}"
- echo
-}
-
-src_prepare() {
- # apply LINUX-arch patches to vmd configure
- epatch "${FILESDIR}/${P}-config.patch"
- epatch "${FILESDIR}/${P}-use-bash-startup.patch"
-
- # prepare the plugins
- cd "${WORKDIR}"/plugins
-
- sed -e "s:CC = gcc:CC = $(tc-getCC):" \
- -e "s:CXX = g++:CXX = $(tc-getCXX):" \
- -e "s:COPTO =.*\":COPTO = -fPIC -o\":" \
- -e "s:LOPTO = .*\":LOPTO = -fPIC -o\":" \
- -e "s:CCFLAGS =.*\":CCFLAGS = ${CFLAGS}\":" \
- -e "s:CXXFLAGS =.*\":CXXFLAGS = ${CXXFLAGS}\":" \
- -e "s:SHLD = gcc:SHLD = $(tc-getCC):" \
- -e "s:-ltcl8.5:-ltcl:" \
- -i Make-arch || die "Failed to set up plugins Makefile"
-
- # prepare vmd itself
- cd "${S}"
-
- sed -e "s:gentoo-bindir:${D}/usr/bin:" \
- -e "s:gentoo-libdir:${D}/usr/$(get_libdir):" \
- -i configure || die "failed to adjust install paths"
-
- sed -e "s:gentoo-opengl-include:/usr/include/GL:" \
- -e "s:gentoo-opengl-libs:/usr/$(get_libdir):" \
- -i configure || die "failed to adjust OpenGL paths"
-
- sed -e "s:gentoo-gcc:$(tc-getCC):" \
- -e "s:gentoo-g++:$(tc-getCXX):" \
- -e "s:gentoo-cflags:${CFLAGS}:" \
- -i configure || die "Failed to adjust C compiler/flags"
-
- sed -e "s:gentoo-plugindir:${WORKDIR}/plugins:" \
- -i configure || die "Failed to set up linking to plugin files"
-
- sed -e "s:gentoo-fltk-include:/usr/include/fltk-1.1:" \
- -e "s:gentoo-fltk-libs:/usr/$(get_libdir)/fltk-1.1:" \
- -i configure || die "failed setting up fltk"
-
- sed -e "s:gentoo-netcdf-include:/usr/include:" \
- -e "s:gentoo-netcdf-libs:/usr/$(get_libdir):" \
- -i configure || die "failed to set up netcdf"
-
- # get installed python version
- python_version
- local PY="python${PYVER}"
-
- local NUMPY_INCLUDE="site-packages/numpy/core/include"
- sed -e "s:gentoo-python-include:/usr/include/${PY}:" \
- -e "s:gentoo-python-lib:/usr/$(get_libdir)/${PY}:" \
- -e "s:gentoo-python-link:${PY}:" \
- -e "s:gentoo-numpy-include:/usr/$(get_libdir)/${PY}/${NUMPY_INCLUDE}:" \
- -i configure || die "failed setting up python"
-
- sed -e "s:LINUXPPC:LINUX:g" \
- -e "s:LINUXALPHA:LINUX:g" \
- -e "s:LINUXAMD64:LINUX:g" \
- -i "${S}"/bin/vmd.sh || die "failed setting up vmd wrapper script"
-}
-
-src_configure() {
- local myconfig="LINUX OPENGL FLTK TK TCL PTHREADS PYTHON IMD NETCDF NUMPY"
- rm -f configure.options && echo $myconfig >> configure.options
-
- ./configure &> /dev/null || die "failed to configure"
-}
-
-src_compile() {
- # build plugins
- cd "${WORKDIR}"/plugins
-
- make LINUX TCLINC="-I/usr/include" \
- TCLLIB="-L/usr/$(get_libdir)" \
- || die "failed to build plugins"
-
- # build vmd
- cd "${S}"/src
- emake || die "failed to build vmd"
-}
-
-src_install() {
- # install plugins
- cd "${WORKDIR}"/plugins
- PLUGINDIR=${D}/usr/$(get_libdir)/${PN}/plugins make distrib || \
- die "failed to install plugins"
-
- # install vmd
- cd "${S}"/src
- make install || die "failed to install vmd"
-
- # export STRIDE_BIN so VMD knows where to find stride
- echo "STRIDE_BIN=/usr/bin/stride" > "${T}"/99${PN} || \
- die "Failed to create vmd env file"
- doenvd "${T}"/99${PN} || die "Failed to install vmd env file"
-
- # install docs
- cd "${S}"
- dodoc Announcement README doc/ig.pdf doc/ug.pdf
-
- # remove some of the things we don't want and need in
- # /usr/lib
- cd "${D}"/usr/$(get_libdir)/vmd
- rm -fr doc README Announcement LICENSE || \
- die "failed to clean up /usr/lib/vmd directory"
-
- # adjust path in vmd wrapper
- sed -e "s:${D}::" -i "${D}"/usr/bin/${PN} \
- || die "failed to set up vmd wrapper script"
-
- # install icon and generate desktop entry
- insinto /usr/share/pixmaps
- doins "${FILESDIR}"/vmd.png || die "Failed to install vmd icon"
- insinto /usr/share/applications
- doins "${FILESDIR}"/vmd.desktop || die "Failed to install desktop entry"
-}