diff options
Diffstat (limited to 'sci-biology/tophat')
| -rw-r--r-- | sci-biology/tophat/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-biology/tophat/tophat-1.0.12.ebuild | 10 |
2 files changed, 10 insertions, 5 deletions
diff --git a/sci-biology/tophat/ChangeLog b/sci-biology/tophat/ChangeLog index 22bb55cca671..de94fe14956a 100644 --- a/sci-biology/tophat/ChangeLog +++ b/sci-biology/tophat/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/tophat # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/tophat/ChangeLog,v 1.1 2009/12/07 15:50:08 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/tophat/ChangeLog,v 1.2 2009/12/07 21:03:03 weaver Exp $ + + 07 Dec 2009; Andrey Kislyuk <weaver@gentoo.org> tophat-1.0.12.ebuild: + Fix x86 compile issue. Thanks to Fabian Groffen. *tophat-1.0.12 (07 Dec 2009) diff --git a/sci-biology/tophat/tophat-1.0.12.ebuild b/sci-biology/tophat/tophat-1.0.12.ebuild index e691698188d7..0082942fbc0a 100644 --- a/sci-biology/tophat/tophat-1.0.12.ebuild +++ b/sci-biology/tophat/tophat-1.0.12.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2009 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/tophat/tophat-1.0.12.ebuild,v 1.1 2009/12/07 15:50:08 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/tophat/tophat-1.0.12.ebuild,v 1.2 2009/12/07 21:03:03 weaver Exp $ EAPI="2" @@ -13,16 +13,18 @@ SRC_URI="http://tophat.cbcb.umd.edu/downloads/${P}.tar.gz" LICENSE="Artistic" SLOT="0" IUSE="" -KEYWORDS="~amd64" +KEYWORDS="~amd64 ~x86" -DEPEND="sci-biology/bowtie" -RDEPEND="${DEPEND}" +DEPEND="" +RDEPEND="sci-biology/bowtie" src_prepare() { # fix gcc-4.4 missing include sed -i '/#include <string>/ a #include <stdio.h>' "${S}/src/gff_juncs.cpp" || die # fix parallel make race sed -i -e 's/\$(top_builddir)\/src\///g' src/Makefile.am || die + # remove broken arch-dependent CFLAGS setting + perl -i -ne 'print unless /case "\${host_cpu}-\${host_os}" in/../^esac/' configure.ac || die eautoreconf || die } |