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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-07-25 18:01:15 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-07-25 18:01:15 +0000 |
| commit | e6c8618d129b9c682b2f5d9d86c8f6f42d73170f (patch) | |
| tree | f005186a7271f2c92c529d6ceb3ac716717542bf /sci-biology | |
| parent | Move filter-flags for -fPIE before econf so it has some effect wrt #327369. (diff) | |
| download | gentoo-2-e6c8618d129b9c682b2f5d9d86c8f6f42d73170f.tar.gz gentoo-2-e6c8618d129b9c682b2f5d9d86c8f6f42d73170f.tar.bz2 gentoo-2-e6c8618d129b9c682b2f5d9d86c8f6f42d73170f.zip | |
Version bump
(Portage version: 2.2_rc67/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/shrimp/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/shrimp/shrimp-2.0.1.ebuild | 35 |
2 files changed, 41 insertions, 1 deletions
diff --git a/sci-biology/shrimp/ChangeLog b/sci-biology/shrimp/ChangeLog index 0e1c03d8d428..992ca71461d1 100644 --- a/sci-biology/shrimp/ChangeLog +++ b/sci-biology/shrimp/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/shrimp # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/ChangeLog,v 1.8 2010/01/03 14:19:01 pacho Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/ChangeLog,v 1.9 2010/07/25 18:01:15 weaver Exp $ + +*shrimp-2.0.1 (25 Jul 2010) + + 25 Jul 2010; Andrey Kislyuk <weaver@gentoo.org> +shrimp-2.0.1.ebuild: + Version bump 03 Jan 2010; Pacho Ramos <pacho@gentoo.org> shrimp-1.3.1.ebuild: amd64 stable, bug 298764 diff --git a/sci-biology/shrimp/shrimp-2.0.1.ebuild b/sci-biology/shrimp/shrimp-2.0.1.ebuild new file mode 100644 index 000000000000..a237b857823b --- /dev/null +++ b/sci-biology/shrimp/shrimp-2.0.1.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/shrimp-2.0.1.ebuild,v 1.1 2010/07/25 18:01:15 weaver Exp $ + +EAPI="2" + +MY_PV=${PV//./_} + +DESCRIPTION="SHort Read Mapping Package" +HOMEPAGE="http://compbio.cs.toronto.edu/shrimp/" +SRC_URI="http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_${MY_PV}.src.tar.gz" + +LICENSE="as-is" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="sys-devel/gcc[openmp]" +RDEPEND="" + +S="${WORKDIR}/SHRiMP_${MY_PV}" + +src_prepare() { + sed -i -e '1 a #include <stdint.h>' common/dag_glue.cpp || die + sed -i -e '1 a CXXFLAGS+= -O3 -mmmx -msse -msse2 -fopenmp' \ + -e 's/-static//' "${S}/Makefile" || die +} + +src_install() { + rm bin/README + dobin bin/* || die + insinto /usr/share/${PN} + doins -r utils || die + dodoc HISTORY README TODO SPLITTING_AND_MERGING +} |