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author | Andrey Kislyuk <weaver@gentoo.org> | 2009-03-15 16:58:21 +0000 |
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committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-03-15 16:58:21 +0000 |
commit | 6950eb4f6248fa64105019fcd75db0bf0ff6cba7 (patch) | |
tree | 990021a3570d93985177c35515ea911d5d3a2609 /sci-biology/consed | |
parent | Added neurogeek as maintainer. (diff) | |
download | gentoo-2-6950eb4f6248fa64105019fcd75db0bf0ff6cba7.tar.gz gentoo-2-6950eb4f6248fa64105019fcd75db0bf0ff6cba7.tar.bz2 gentoo-2-6950eb4f6248fa64105019fcd75db0bf0ff6cba7.zip |
Revision bump fixes several issues in installation of supplementary files
(Portage version: 2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64)
Diffstat (limited to 'sci-biology/consed')
-rw-r--r-- | sci-biology/consed/ChangeLog | 8 | ||||
-rw-r--r-- | sci-biology/consed/consed-19-r1.ebuild (renamed from sci-biology/consed/consed-19.ebuild) | 27 |
2 files changed, 27 insertions, 8 deletions
diff --git a/sci-biology/consed/ChangeLog b/sci-biology/consed/ChangeLog index 3ba58f774c4c..26f4f2b2ad8a 100644 --- a/sci-biology/consed/ChangeLog +++ b/sci-biology/consed/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/consed # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/consed/ChangeLog,v 1.1 2009/02/18 16:21:44 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/consed/ChangeLog,v 1.2 2009/03/15 16:58:21 weaver Exp $ + +*consed-19-r1 (15 Mar 2009) + + 15 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> -consed-19.ebuild, + +consed-19-r1.ebuild: + Revision bump fixes several issues in installation of supplementary files *consed-19 (18 Feb 2009) diff --git a/sci-biology/consed/consed-19.ebuild b/sci-biology/consed/consed-19-r1.ebuild index 85e6a7e209e0..168e97a9fe72 100644 --- a/sci-biology/consed/consed-19.ebuild +++ b/sci-biology/consed/consed-19-r1.ebuild @@ -1,13 +1,13 @@ # Copyright 1999-2009 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/consed/consed-19.ebuild,v 1.1 2009/02/18 16:21:44 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/consed/consed-19-r1.ebuild,v 1.1 2009/03/15 16:58:21 weaver Exp $ inherit toolchain-funcs DESCRIPTION="Consed: a genome sequence finishing program" HOMEPAGE="http://bozeman.mbt.washington.edu/consed/consed.html" -SRC_URI="consed-19-sources.tar.gz - consed-19-linux.tar.gz" +SRC_URI="${P}-sources.tar.gz + ${P}-linux.tar.gz" LICENSE="phrap" SLOT="0" @@ -16,6 +16,7 @@ IUSE="" DEPEND="x11-libs/openmotif" RDEPEND="${DEPEND} + >=sci-biology/phred-000925 >=sci-biology/phrap-1.080721" S="${WORKDIR}" @@ -24,10 +25,10 @@ RESTRICT="fetch" pkg_nofetch() { einfo "Please visit ${HOMEPAGE} and obtain the file" - einfo "\"sources.tar.gz\", then rename it to \"consed-${PV}-sources.tar.gz\"" + einfo "\"sources.tar.gz\", then rename it to \"${P}-sources.tar.gz\"" einfo "and place it in ${DISTDIR}," einfo "obtain the file" - einfo "\"consed_linux.tar.gz\", then rename it to \"consed-${PV}-linux.tar.gz\"" + einfo "\"consed_linux.tar.gz\", then rename it to \"${P}-linux.tar.gz\"" einfo "and place it in ${DISTDIR}" } @@ -37,6 +38,8 @@ src_unpack() { sed -i -e '/CLIBS=/ s/$/ -lXm -lXt -lSM -lICE -lXext -lXmu -lXp -lm/' \ -e 's/ARCHIVES=/ARCHIVES=\n_ARCHIVES=/' \ -e 's/CFLGS=/CFLGS= ${CFLAGS} /' "${S}/makefile" || die + sed -i -e 's/CFLAGS=/CFLAGS += /' "${S}"/misc/*/Makefile || die + sed -i 's!\($szPhredParameterFile =\).*!\1 $ENV{PHRED_PARAMETER_FILE} || "/usr/share/phred/phredpar.dat";!' "${S}/scripts/"* || die } src_compile() { @@ -48,10 +51,20 @@ src_compile() { src_install() { dobin consed misc/{mktrace/mktrace,phd2fasta/phd2fasta,454/sff2scf} || die - dobin scripts/* || die + dobin scripts/* contributions/* || die + insinto /usr/lib/screenLibs + doins misc/*.{fa*,seq} insinto /usr/share/${PN}/examples - doins -r standard polyphred autofinish assembly_view 454_newbler align454reads align454reads_answer solexa_example solexa_example_answer selectRegions selectRegionsAnswer || die + doins -r standard polyphred autofinish assembly_view 454_newbler \ + align454reads align454reads_answer solexa_example \ + solexa_example_answer selectRegions selectRegionsAnswer || die echo 'CONSED_HOME=/usr' > "${S}/99consed" + echo 'PHRED_PARAMETER_FILE=/usr/share/phred/phredpar.dat' >> "${S}/99consed" doenvd "${S}/99consed" || die dodoc README.txt *_announcement.txt } + +pkg_postinst() { + einfo "Package documentation is available at" + einfo "http://www.phrap.org/consed/distributions/README.${PV}.0.txt" +} |