version bump

4 files changed, 56 insertions, 3 deletions

diff --git a/app-sci/bioperl-run/ChangeLog b/app-sci/bioperl-run/ChangeLog
index 54df8faf6404..5c4f4b13cd44 100644
--- a/app-sci/bioperl-run/ChangeLog
+++ b/app-sci/bioperl-run/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for app-sci/bioperl-run
 # Copyright 2000-2003 Gentoo Technologies, Inc.; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/bioperl-run/ChangeLog,v 1.2 2003/12/14 05:15:03 sediener Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/bioperl-run/ChangeLog,v 1.3 2004/01/09 02:59:06 sediener Exp $
+
+*bioperl-run-1.4 (08 Jan 2004)
+
+  08 Jan 2004; Stephen Diener <sediener@gentoo.org> bioperl-run-1.4.ebuild:
+  version bump to 1.4
 
   14 Dec 2003; Stephen Diener <sediener@gentoo.org> bioperl-run-1.2.2.ebuild:
   Bump to stable
diff --git a/app-sci/bioperl-run/Manifest b/app-sci/bioperl-run/Manifest
index 2b6dd2041921..7a67049803f9 100644
--- a/app-sci/bioperl-run/Manifest
+++ b/app-sci/bioperl-run/Manifest
@@ -1,6 +1,6 @@
-MD5 cbd39470a0274952539c7b01b68850a5 bioperl-run-1.4.ebuild 1322
+MD5 685321237b4e542ca26e32d8eabf0fe3 bioperl-run-1.4.ebuild 1321
 MD5 48dbd04688a838b44dd76c2b02194e62 bioperl-run-1.2.2.ebuild 1475
-MD5 54a369cdab631e4e3a56fa32c761bf1b ChangeLog 542
+MD5 fb89ac6217710905a52dd92f9bf476ed ChangeLog 673
 MD5 e8b4df3df76800c376905734d8043cfa metadata.xml 216
 MD5 47db6a1f839dd45f8c891b5f6ab2ff2a files/digest-bioperl-run-1.4 67
 MD5 21ad123058f1e670f289ee1a87de4e82 files/bioperl-run-Pise-test-patch.diff 722
diff --git a/app-sci/bioperl-run/bioperl-run-1.4.ebuild b/app-sci/bioperl-run/bioperl-run-1.4.ebuild
new file mode 100644
index 000000000000..f94eaba59bfc
--- /dev/null
+++ b/app-sci/bioperl-run/bioperl-run-1.4.ebuild
@@ -0,0 +1,47 @@
+# Copyright 1999-2004 Gentoo Technologies, Inc.
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/bioperl-run/bioperl-run-1.4.ebuild,v 1.1 2004/01/09 02:59:06 sediener Exp $
+
+inherit perl-module eutils
+CATEGORY="app-sci"
+
+DESCRIPTION="collection of tools for bioinformatics, genomics and life science research : subset required to run analyses"
+HOMEPAGE="http://www.bioperl.org/"
+#SRC_URI="http://www.cpan.org/modules/by-module/Bio/${P}.tar.gz"
+SRC_URI="http://www.bioperl.org/ftp/DIST/${P}.tar.gz"
+
+LICENSE="Artistic GPL-2"
+SLOT="0"
+KEYWORDS="~x86"
+IUSE=""
+
+RDEPEND="
+	dev-perl/Algorithm-Diff
+	dev-perl/File-Temp
+	dev-perl/IO-String
+	dev-perl/XML-Parser"
+
+DEPEND="${RDEPEND}"
+
+src_compile() {
+	perl-module_src_compile || die "compile failed"
+	# make test
+	#perl-module_src_test || die "src test failed"
+}
+
+src_install() {
+	mydoc="AUTHORS BUGS INSTALL.PROGRAMS README"
+	perl-module_src_install
+
+	# bioperl scripts and examples
+	einfo 'Adding bioperl examples and scripts to /usr/share/...'
+	dodir /usr/share/${PF}/scripts
+	#insinto /usr/share/${PF}/scripts
+	cd ${S}/scripts/
+	tar cf - ./ | ( cd ${D}/usr/share/${PF}/scripts; tar xf -)
+	dodir /usr/share/${PF}/examples
+	cd ${S}/examples/
+	tar cf - ./ | ( cd ${D}/usr/share/${PF}/examples; tar xf -)
+	cd ${S}
+
+}
diff --git a/app-sci/bioperl-run/files/digest-bioperl-run-1.4 b/app-sci/bioperl-run/files/digest-bioperl-run-1.4
new file mode 100644
index 000000000000..5c20eceaee32
--- /dev/null
+++ b/app-sci/bioperl-run/files/digest-bioperl-run-1.4
@@ -0,0 +1 @@
+MD5 25914ab48d1ab0393ebb067a8f68a821 bioperl-run-1.4.tar.gz 830774